Sphingobacterium daejeonense: NCTC13534_04996
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Entry
NCTC13534_04996 CDS
T06632
Symbol
lpxC
Name
(GenBank) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
KO
K16363
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:
3.5.1.108
4.2.1.59
]
Organism
sdj
Sphingobacterium daejeonense
Pathway
sdj00061
Fatty acid biosynthesis
sdj00540
Lipopolysaccharide biosynthesis
sdj01100
Metabolic pathways
sdj01212
Fatty acid metabolism
Module
sdj_M00083
Fatty acid biosynthesis, elongation
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
NCTC13534_04996 (lpxC)
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
NCTC13534_04996 (lpxC)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
sdj01005
]
NCTC13534_04996 (lpxC)
01004 Lipid biosynthesis proteins [BR:
sdj01004
]
NCTC13534_04996 (lpxC)
Enzymes [BR:
sdj01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.108 UDP-3-O-acyl-N-acetylglucosamine deacetylase
NCTC13534_04996 (lpxC)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.59 3-hydroxyacyl-[acyl-carrier-protein] dehydratase
NCTC13534_04996 (lpxC)
Lipopolysaccharide biosynthesis proteins [BR:
sdj01005
]
Lipid A
NCTC13534_04996 (lpxC)
Lipid biosynthesis proteins [BR:
sdj01004
]
Fatty acid synthase
Component type
NCTC13534_04996 (lpxC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LpxC
FabA
ApeI-like
Motif
Other DBs
NCBI-ProteinID:
VTQ06275
LinkDB
All DBs
Position
1:complement(4154782..4156176)
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AA seq
464 aa
AA seq
DB search
MNVKQRTIKSDVHFSGVGLHTGKQVNVTLKPADENHWYKFKRIDLEGQPIVNVDADNVSN
TARGTTISQNGASVSTIEHLMAALVGLQLDNVLIEIDGPEVPILDGSSAIFIDKIQEVGF
HDQDADREYFEVTDNIHYTDPESKVEIVAMPVDGYRITCMIDFNSPVLGSQHASLSNLDE
FSKEIAGSRTFCFLHELEALVSQNLIKGGDLSNAIVIVDKEVTEGELDKLQDLFHKRVEV
AQEGILNNISLRYQNEPARHKLLDMIGDLALVGKPIKGHIMAARPGHAANVAFAKRIKGQ
MKRERNKKNVKVYDPNTPPVYDTVQIMNILPHRQPFLMIDKILELSETHVVGLKNVTMNE
DLFMGHFPGAPLFPGVLQIEAMAQTGGILVLNTVPDPENWLTLFLKIENARFKNQVVPGD
TVIFTCELLEPIRRGIARMKGVGMVGDKVVSEAELMAQIVKVKG
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtaaaacagagaaccattaaatctgatgtccatttttcgggcgttggccttcac
acggggaaacaggtcaacgtaacattgaaaccagcagatgagaatcactggtataaattc
aagagaatagatttagagggtcaaccaattgtcaatgttgatgctgacaatgtgagcaat
actgctaggggaactactatttcacagaatggtgcttccgttagtacgattgagcatttg
atggcagcattggttggcctgcaattggataatgttttaatagaaatagatggtcctgag
gttcctattttggatggtagttcagcgattttcatcgataagattcaagaagtagggttt
catgatcaagatgctgaccgcgagtatttcgaggtcacagataatatacactatactgat
ccagagagtaaagtagagattgttgcgatgccggttgatggttaccgtattacctgcatg
attgatttcaattcaccagttttgggaagtcagcatgcatccttgagcaatctggatgaa
ttcagcaaagagatagctggtagccgcactttttgcttcttacatgagttagaggctttg
gttagtcaaaacctgattaaagggggagacttgtcgaatgcgattgtgattgtcgacaaa
gaggttactgaaggcgagttagataaattacaggatttatttcataagcgtgttgaggtt
gctcaagagggtatcttgaacaatatttcattgcgttatcagaatgaacctgcgagacat
aaattgttggacatgattggcgaccttgccttggtagggaaaccaattaagggccatata
atggcagcacgtcctggacatgctgcaaacgttgcatttgccaaacgcataaaaggtcaa
atgaaacgtgaaaggaataaaaagaacgtaaaggtttatgaccccaatacacctcctgtg
tatgatacagttcaaatcatgaatattttgcctcatcgtcagccatttttgatgattgac
aagatcttggaactatctgaaacacatgtggttggtcttaagaacgtgacgatgaacgag
gatttgttcatgggtcattttcctggggctccattatttccgggtgtattgcagattgag
gcaatggcacaaactgggggtattttggtcttaaacaccgttcctgaccctgaaaactgg
ttgacattattcttgaagattgaaaacgcgagatttaagaaccaagttgtacctggggat
actgttattttcacttgtgaattgttggagccgatccgtcgcggtattgcaaggatgaaa
ggtgttggcatggttggtgataaagtagtaagtgaagcagaattgatggcccagatcgtt
aaggtcaaaggataa
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