Sphingobacterium daejeonense: NCTC13534_05084
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Entry
NCTC13534_05084 CDS
T06632
Symbol
rlmCD
Name
(GenBank) 23S rRNA (uracil-C(5))-methyltransferase RlmCD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sdj
Sphingobacterium daejeonense
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdj03009
]
NCTC13534_05084 (rlmCD)
Enzymes [BR:
sdj01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NCTC13534_05084 (rlmCD)
Ribosome biogenesis [BR:
sdj03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NCTC13534_05084 (rlmCD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
MTS
Cons_hypoth95
PrmA
FtsJ
PCMT
Methyltransf_11
UPF0020
Motif
Other DBs
NCBI-ProteinID:
VTQ06619
LinkDB
All DBs
Position
1:complement(4245720..4247129)
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AA seq
469 aa
AA seq
DB search
MGRRIPQDKKFISNVEIIDIAEEGKGVAKHDNLVLFIERAVPGDIVDVELQRKKKNFAEG
KIAEVKKPSEYRIDPFCSHFGVCGGCKWQHMTYDSQLKFKEQYVGNALSRIGKVDVSAME
PILGSEQTEYYRNKLEYTFSNKRWLTSLDEIEPTDSMDALGFHVPGRFDKILTVDHCYLQ
QDPSNDIRNTVFQFAKDNFMSFYDLREHQGALRNLIIRTSSTGELMVIVVFAYPEEGQID
MLMSFIKDEFPQITSLLYIVNQKRNDTIFDQDIHVYAGRDFIYEEMEGLKFKVGPKSFYQ
TNSRQAYELYKITREFADLKGDELVYDLYTGAGTIANFVARSAKEVVGVEYVPSAIEDAK
INSETNGIQNTKFYAGDMKDVLTSDFIAEHGKPDVVITDPPRAGMHPDVVNRILEMESEK
VVYVSCNAATQARDLESLTTKYEIVRIKPVDMFPHTQHVENVVLLKLKK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgggaagaagaatacctcaggataagaagtttatttcaaacgttgaaataattgatatt
gccgaagaaggcaaaggcgtagctaagcacgataatttggtgcttttcatagagcgtgcc
gtgccaggtgatatagtggatgtggagctccaacgcaaaaaaaagaattttgccgaaggc
aaaattgctgaggtcaaaaaaccttcagaatacagaatagatcctttctgttctcatttc
ggagtatgtggtggctgtaaatggcaacatatgacctatgattcccagttgaagttcaaa
gaacagtatgtcggaaatgcactttcaagaattggaaaagttgatgtctccgctatggaa
cccatcttaggatcggaacaaacagaatattatagaaataaattagaatatacattttca
aataaacgttggttgacgagtttggatgaaatcgaaccaaccgactcaatggatgcattg
ggtttccatgttccgggtaggtttgacaaaattcttaccgtagaccactgctacttacaa
caagacccttctaatgatattagaaacaccgtctttcagttcgcaaaagataattttatg
tctttttatgacctgagagaacatcaaggtgcactaagaaacctgataattagaacttct
tcaaccggcgagctcatggtcatcgttgttttcgcttacccagaggaaggacagattgat
atgctgatgtcctttataaaggatgaattccctcaaattacctccttattatatatagtc
aatcagaaaagaaacgacactatctttgatcaagatatccatgtgtatgctggtcgtgat
tttatttatgaggaaatggaaggtttgaaattcaaggtggggcctaaatctttctatcaa
acaaattctagacaagcttacgaattatataaaattactagagagtttgcagatttaaaa
ggtgatgaattggtttatgatttatataccggtgcaggtaccattgcaaattttgttgcc
agatcagctaaggaagtggtgggtgtagaatatgtgccatcagcaatcgaagatgctaag
atcaattctgaaactaatggtattcaaaacaccaaattttatgctggcgatatgaaagat
gttttgacttcagatttcatagcagaacatggcaagccagatgttgtaataactgaccct
ccaagagcgggaatgcacccagatgttgtaaaccgaattttggaaatggaaagtgaaaaa
gtagtctatgtaagttgtaatgcagctactcaggcacgtgatttggagagtctaacaaca
aagtatgagatagttcgaataaaacctgtcgacatgttcccgcatactcagcatgttgaa
aacgtcgtattattaaaattgaagaaataa
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