Sphingobacterium daejeonense: NCTC13534_05401
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Entry
NCTC13534_05401 CDS
T06632
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sdj
Sphingobacterium daejeonense
Pathway
sdj03030
DNA replication
sdj03410
Base excision repair
sdj03420
Nucleotide excision repair
sdj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC13534_05401 (polA)
03410 Base excision repair
NCTC13534_05401 (polA)
03420 Nucleotide excision repair
NCTC13534_05401 (polA)
03440 Homologous recombination
NCTC13534_05401 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdj03032
]
NCTC13534_05401 (polA)
03400 DNA repair and recombination proteins [BR:
sdj03400
]
NCTC13534_05401 (polA)
Enzymes [BR:
sdj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC13534_05401 (polA)
DNA replication proteins [BR:
sdj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC13534_05401 (polA)
DNA repair and recombination proteins [BR:
sdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NCTC13534_05401 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13534_05401 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_2
HHH_5
DUF3913
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
VTQ07876
LinkDB
All DBs
Position
1:4534693..4537500
Genome browser
AA seq
935 aa
AA seq
DB search
MKKLFLLDGMALIYRAYFALSKTPRITSYGLNTGAIMGFTNTLLEVLNNQKPTHIAVVFD
TAAPTNRHLEFEAYKAQRQQMPEDLAASIPYIFRLIEGFNIPIITKDGYEADDIIGTLAK
KGEKLDYTVYCMTPDKDFGQLVSENIFIYKPARMGNGAETLGVTEILDKWEINHVHEVID
ILGLWGDAVDNIPGIPGIGEKTAKKLIQEFGSIENLIQNTDKLKGKLKENVENHAEQGLI
SKKLATILLDVPVDFDEQSLELEKPNKDVLEPLFVELEFRTLGKRVFGDDFSMLEHANPK
AGQMDLFAVHEDGNLAGATSSQTTASTEPVAFTNIHNTNHEYILLDTEEKQREFAERLSK
EKSFSFDTETTGLDALQAELVGFSFSIKPQEAYYVPVSADPVEAQRTADIFKGVLENEEI
EKVGQNLKYDILLLSRYGIDVRGDFFDTMLAHYLIDPDTRHNMDFLSETYLNYTPVSITE
LIGGKGKNQGNMRDVEIELVKEYASEDADITLQLRNKFAPLLEDSFTHDLAKKVEFPLLK
VLSTIERNGVKIDVDTLQLFSKEIEKEVKQLEQQIYEKAGVSFNIASPKQLGEVLFDKLQ
LDPKAKKTKTGQYKTGEDVLLALANKSDIVQDILDFRQLQKLKSTYVDSLPNLINPHTGL
IHTSYNQAVAATGRLSSTNPNLQNIPIRTARGREVRKAFISRDENWTLLSADYSQIELRL
MAELSQDVNMLEAFKQGLDIHKATAARVYGVALEEVSSDMRRNAKAVNFGIIYGQSAFGL
SQNLGISRKEAAEIIEQYFSQYTGIRKYMGEVIEFAKENGYVETILKRRRYLRDINSANM
TVRGFAERNAINAPIQGSAADLIKIAMINIQKDIEDRGLEGKMIMQVHDELVFDVPNHEI
SVFKEIIEDRMKNAIELQVPIEVEIGEGKNWLEAH
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaagttatttcttttagacgggatggcactgatttatcgtgcctattttgcattg
agcaagactccacgtattacttcatacggactgaacacaggtgctattatgggttttacc
aatacgctacttgaagttttgaacaatcaaaagcctacacatatagctgttgtatttgat
acggcagcacctaccaatcgacatttagaatttgaggcctataaagcccagcgtcagcag
atgccggaggacctggcagcttccattccttatatattcaggcttatcgaagggtttaat
atcccaataatcacgaaggatggttacgaagctgatgatattattgggactttggcaaaa
aaaggcgagaaactggattatactgtttattgtatgacaccagacaaggattttggccaa
ttggtttcagaaaatatctttatttataaacctgcccgtatgggtaatggtgcggaaaca
ttgggtgttaccgagatattggataaatgggaaatcaaccatgtccatgaggtgattgac
atattgggtttatggggtgatgccgtcgacaatatcccagggataccgggtattggtgaa
aaaaccgcaaaaaagttgattcaggaatttgggtcgatagaaaacctgatccagaacacc
gacaagctcaagggcaagttgaaggaaaatgtcgagaaccatgcagaacaaggtttgatt
tcaaagaagctggcgacgatcttattggatgttccggtggatttcgatgagcaatccttg
gagctagagaagccaaacaaagatgttttggagcctctttttgtcgaactggagtttcgg
actttagggaagcgagtttttggagatgacttcagcatgctggaacatgccaatccaaaa
gcaggacagatggatctatttgccgtccatgaggatggcaaccttgctggtgcaacttct
tcccagactactgcaagcacagaaccggtagcatttacaaatatccacaataccaaccat
gaatatattctgttggataccgaggagaaacaaagggaatttgcagaacggttgagtaaa
gaaaaatcattcagctttgatacggaaaccacgggtttagacgctttacaggcagaattg
gttggtttttcttttagtatcaagccacaggaagcttattatgtcccggtttctgcagat
ccggtggaggctcagaggactgccgatattttcaagggggttttggaaaatgaggagatt
gaaaaggtaggtcagaatttaaaatacgatatactattgttgtcaaggtatggcatcgat
gttcgaggcgacttttttgatacgatgcttgcccattacctgattgatcccgacactagg
cataatatggattttctttcggagacctatttgaattatacaccggtttctattacagaa
ttaatcggcggaaagggcaagaatcaaggcaatatgagagatgtggagattgaattggtg
aaggagtatgcatctgaggatgctgatattaccttacagcttcgcaacaagtttgctcct
cttttagaggacagttttacccatgatttggcgaaaaaggtagaatttccattattgaag
gttttgtctacgattgaacgtaatggtgtaaagatcgatgttgacactttgcaattgttt
tcgaaggagattgaaaaagaggtaaagcagttggagcagcagatttatgagaaggctggt
gtttcctttaacattgcatcaccgaagcagttgggcgaagttttgtttgacaaattgcaa
ttggacccgaaagcgaagaaaactaaaacaggtcaatacaaaactggtgaggatgtatta
ttggctttggccaacaagtctgatattgtacaggacatcttggatttcaggcaattgcag
aagttgaaatcgacgtatgttgactccttgcctaatttgatcaatccacatacggggttg
attcacacatcttataaccaagcggttgctgcgacagggagattaagttctacgaatcca
aatctacagaatatccctatccgtactgctcggggtcgggaggtcaggaaggcatttatc
agtagggatgaaaactggactttgttatctgcggattattctcagatcgagttgaggttg
atggcagaacttagccaggatgtgaatatgttggaggcgtttaagcagggactagatatt
cataaagccactgcggccagggtttatggcgtagcgctggaggaagtcagttctgatatg
cgtagaaacgcgaaggcagtaaacttcgggattatatacggtcagtcagcatttggtttg
tcccagaacttgggcatcagccgtaaggaagctgccgagatcatagaacaatacttcagt
caatatacgggcatccggaaatacatgggtgaggtaattgagtttgcgaaggagaacggc
tatgttgaaactatattgaagcgaagacgttatttaagggatatcaactctgcgaacatg
acggttcggggatttgcggagcgcaatgcgatcaatgctccgattcaaggttctgcagca
gatttaataaaaatcgcgatgatcaatattcagaaagatattgaggatagaggccttgaa
gggaaaatgattatgcaggttcatgatgagcttgtgtttgatgttccgaaccatgagatt
tccgttttcaaggagattattgaggatcggatgaaaaatgcgattgaacttcaggtaccg
atagaagtagagattggcgagggcaaaaattggctggaagcacattaa
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