Shewanella dokdonensis: KHX94_00890
Help
Entry
KHX94_00890 CDS
T07469
Name
(GenBank) SMC family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
sdk
Shewanella dokdonensis
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdk03400
]
KHX94_00890
DNA repair and recombination proteins [BR:
sdk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KHX94_00890
Archaeal homologous recombinant proteins
KHX94_00890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_27
SMC_N
AAA_29
HOOK
DUF4200
Baculo_PEP_C
AAA_21
Motif
Other DBs
NCBI-ProteinID:
QVK23391
LinkDB
All DBs
Position
complement(178125..181205)
Genome browser
AA seq
1026 aa
AA seq
DB search
MKPLVLTMSAFGPFADSQTIDFRRLGDNPLFLINGPTGAGKTSILDAICFALYGKTTGNE
REAPQMRCDYADDNLLTEVSLEFTLGERRYLIKRVPDQQRPKARGDGFTNQSGEAELQRL
YDDGRSEILVASKVTEATQMIESLTGLDVDQFRQVMVLPQGKFRELLLADSKAREKIFSQ
LFQTNIYSRIEERLKQQAATIRKDAHDLEQKRLGILEAAGVESTEALALAISELTPQFEQ
AKAQKQQANVALEQASKQLEQGKQLSGELAEKTRLAASLAEQQARKADIDALKQQLSLAQ
LAQQVLPVYRQQQQRSQELTSQQQALYAAEQQLTHATTQKQQADKQAAGIAELDQQLQHS
RSELQQAQQLQPLLQNYYQQQQQLNDANQQQQQAANAQQAAEHQLQQLQTHKTQLAHTIG
ELQLQANRQAELQTQQYQLERQCDQGRQIQELQRQQQKLAQQLEHKAQQGKQAKAQFDAA
EQQLTVLRMQWYQGQAALLAQQLGPNTPCPVCGSAEHPNPAHSEVAIPSEQQLESAQQQL
EAERRKCEQLRSDYRSLREQISAIDKQLTPLFTALNADSSAALPVTEWQQALTQTQQQLV
SAQQAAQQLNKQQQQLANLEQQLEVQRQQLNSVQQQLAEQQRRSSSLQGALIEIQRRLPE
QLQHLAADAALAQLTEQQQALQQQQAALQQQIQQLQQTQQAAASQLAQAQSALSERQQQL
RQTTQYREQAQQELDSALQQAGFSDVNALVAAQREPQLQQQLTQQIEQWQQQCHALAGQL
DALTQKLKDAVAPELAALTTVVEQQQQQLQLADEQYQQLNSRLSNLTNCQQKLANDAKAL
AALEQQFAVIGTLADVANGNNQSKLSLQRFVLSVLLDDVLLEASERLARMSKGRYRLLRK
EERAKGNRASGLDLEVEDAYSGKVRPVATLSGGESFMAALSLALGLSNVVQAYAGGIKLD
TLFIDEGFGSLDQDSLELAIRTLTDLQSAGRMIGVISHVTEMKEQLLTRVDVHKQARGSH
IYVVTP
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgctagtattgaccatgagcgcctttggcccatttgccgatagccaaactatc
gattttcgccgtttgggtgataacccactgttcttgatcaacggcccgaccggtgccggt
aaaaccagtattttagacgccatctgttttgcgctctacggcaaaaccaccggtaacgaa
cgtgaagcaccgcaaatgcgctgcgattacgccgatgacaatttgctaacggaagtgagc
ctcgaatttaccttgggcgaacgacgttacttgatcaaacgtgtgccagatcagcagcgg
ccaaaggcgcgtggcgatggatttaccaaccaaagcggcgaggcggagctacagcgactg
tacgatgatggccgcagcgaaattctggttgccagtaaagtgaccgaagcgacccagatg
atcgagtcgttaaccggcttggatgtcgatcaattccgccaagtgatggtgttaccccaa
ggtaagtttcgtgagttattgctggcagactcaaaagcgcgcgagaagatttttagtcag
ctatttcaaaccaatatctacagccgcattgaagagcgtttaaagcagcaagcggcgact
atccgtaaagatgcgcacgatctagaacagaagcgccttggcattttagaagcggcgggc
gttgagtcaaccgaagcgctggcgctcgctatcagcgaactgactccgcaatttgaacaa
gccaaagcgcaaaaacagcaagccaacgtagcgctagagcaagccagcaaacagctagag
cagggcaaacaactcagtggtgaattggccgaaaaaacacggctagccgccagcttagcc
gagcagcaagcgcgtaaagcggacatcgatgctttaaagcaacagttgtcattggcgcaa
ttagcacagcaagtgctaccggtgtatcgccagcagcaacagcgcagccaagaactcacc
agccagcagcaagcactgtacgcggctgagcaacaactcacccacgccaccacgcaaaaa
cagcaggctgataagcaagccgcgggcatcgctgagttagatcagcagctgcaacacagt
cgcagtgagttgcagcaagctcagcaactgcaaccattgctacaaaactattatcagcag
caacagcaacttaatgacgctaatcagcaacagcagcaggcggcaaacgcccagcaagcc
gctgagcatcaactgcagcagctccaaacgcacaaaacccagttagcgcacaccattggc
gaattacagctgcaagcgaatcgccaagcggaactgcaaacccagcagtatcagttagag
cggcaatgcgaccaagggcgacaaattcaggagttacagcgacagcagcaaaaattggcg
caacagctggagcacaaggcacagcagggtaaacaggctaaggcgcaatttgatgccgcc
gagcagcaactcactgtgttgcgtatgcaatggtatcaggggcaggcggcattattggcg
caacaacttgggcctaatacgccgtgccccgtgtgtggcagtgcggagcatcctaatccc
gcgcacagtgaagtcgctattccgtcagagcagcagcttgaaagcgcgcagcaacagctt
gaggctgagcgccgcaagtgcgagcagctgcgcagcgattatcgcagtttacgagagcag
atcagcgcgattgataagcagcttacgccgttgttcactgccctaaatgccgacagtagc
gccgcgctgcccgtgacggaatggcaacaggcgttgacacaaacgcagcagcagttagtc
agcgcgcagcaggcggcacaacagctgaataagcagcaacagcagctggcgaacctagag
cagcagttggaggtgcaacgacaacagcttaacagcgtacagcagcaattggcggagcag
caacgtcgcagcagcagcttgcagggggcactgattgaaattcaacggcgtctgccagag
caattgcagcatttggcggcggacgcggcgctggcgcagttaactgagcaacagcaagcg
ttacagcaacagcaagctgcattacagcaacaaatacagcaattgcagcagacgcagcaa
gctgcggcgtcacagttggcacaagctcaaagcgcgctgagcgagcgtcagcagcagtta
cgccaaacaacccaataccgcgagcaagcgcagcaagaacttgatagtgcgttgcaacag
gcgggatttagtgacgttaatgcattagtggcggcacaacgtgagccgcagttgcaacaa
cagttaacgcagcaaatcgaacagtggcagcagcaatgccatgcattagcagggcaactt
gacgcgttgacgcaaaaacttaaagacgcagtggcaccggagctggccgcgttaaccacc
gtggtcgagcagcaacagcaacagctacagctggcagatgaacagtatcaacaactcaat
agccgtttgagtaacctcactaactgccagcaaaagctcgccaacgatgccaaagcgtta
gccgcattagagcagcaatttgcagtgataggcactttggcggatgttgctaacggcaac
aaccaaagcaaactcagtttgcagcgctttgtgctgagcgtattgctcgatgatgtgctg
ctggaagcctctgaacgcttggcgcgcatgagtaaggggcgttatcggttactgcgtaaa
gaggagcgcgccaaaggtaatcgtgcttctgggctagatttagaagtggaagacgcctac
agcggcaaagtccgcccggtggctaccttaagtggcggtgagagttttatggcggcgctg
tcattagcgcttggcctgagcaatgtggtgcaagcgtatgccggtggtatcaaactcgat
acgctgtttatcgacgaaggctttggtagcttagatcaggattcgctcgagctagcgatt
cggacactcactgatttgcagtcagccgggcgcatgattggagtgatctcccacgtaacc
gaaatgaaggagcagctactgacgcgagtcgatgtgcataagcaggcgcgcggcagtcat
atttatgtggttacaccgtga
DBGET
integrated database retrieval system
