Shewanella dokdonensis: KHX94_02220
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Entry
KHX94_02220 CDS
T07469
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
sdk
Shewanella dokdonensis
Pathway
sdk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KHX94_02220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdk03000
]
KHX94_02220
03400 DNA repair and recombination proteins [BR:
sdk03400
]
KHX94_02220
Enzymes [BR:
sdk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
KHX94_02220
Transcription factors [BR:
sdk03000
]
Prokaryotic type
Helix-turn-helix
AraC family
KHX94_02220
DNA repair and recombination proteins [BR:
sdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KHX94_02220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
QVK23589
UniProt:
A0ABX8DFV4
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All DBs
Position
complement(473620..475161)
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AA seq
513 aa
AA seq
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MSISSLSTAICRQARLSRDPRFDGRFFVGVLSTGIYCRPVCPAVSASEKNVQYFASAAAA
AASGLRPCLRCRPESAPGSSAWRGTRTTLERAMCLIEQGALNGDTQQAVELLAQRLGISS
RWLRKLFADALGTSPLQYAIYCRLLFAKQLLHETDMPVTQVALASGFNSIRRFNEVFQQR
LQLTPSAIRHRPAVESAPANIALYLSYRPPYAWQSLRQFLQQRAVAGMEWFEQHDEQGYG
RTLVVKQLQQQLRGWFFAVNEPEQHRFKVEVALVADDALSLLPMWLRQLRQVLDLDAEPA
AINRGLSALLHLLPQLQLQPGLRLPGCGSVAEAGVRAILGQQVSLSQATQLLRQLLQQAG
ETLQINGRDCVFFPALTALTGAVCAALPMPQSRQQTLQRLADYLQTVTQPSTADQALLDD
WQTLKGIGPWTVAYAAMRGLSAPDVLLSGDLVVKKQLLQLLPATAAADMKTTMQQIVATA
SPWGSYLTLTLWQQAAANNTTNNPNSDNRRSRI
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgagtatttccagtttatcgacggcgatttgtcgtcaagcgcgtcttagtcgagatccc
cgttttgatgggcgtttttttgtgggagtgctgagcacagggatctattgtcgtccagta
tgtcccgcggtgagcgccagtgagaaaaatgtgcaatattttgccagtgctgcggcggca
gcggcctcgggtttacgtccctgtttacgttgccgccctgaaagtgcgcccggttccagt
gcctggcgtggtacccgtaccactttagagcgagcaatgtgtctgatagagcagggcgcg
ctcaacggtgacacacaacaagccgttgaattactggcgcagcggttggggatcagtagc
cgctggctgcgaaaactattcgctgatgcgttaggcacctcgcctttgcagtacgctatc
tattgccgcctattgtttgctaaacagttattgcatgaaaccgatatgccggtgacccaa
gtggcattggcttcaggattcaatagcatacggcgtttcaatgaggtctttcagcagcga
ttacagctaacgccaagcgctatccggcatcgcccggcagttgagtcagcgccagctaac
atcgcactttatctgagttatcggccgccctacgcttggcagtcgttgcgacagttttta
cagcaacgcgccgttgcgggcatggaatggtttgaacaacatgatgaacaaggttatggc
cgtacactggtcgtcaaacagttacagcaacagcttcgaggctggttttttgctgtgaat
gaacctgagcaacataggtttaaggtagaggtcgcgctggttgcagacgatgcgctcagt
ttgttgccgatgtggttacggcaattaagacaggtgttggacttggatgccgaacctgcg
gcgattaaccgtggcttatcggcattactgcatttgttgccacaactgcaattacagcca
ggattacggctgccaggctgtggctcagttgcagaggcgggtgtaagggccatactgggg
caacaggtcagtttgtcacaagccacccaattgttgcggcaactgttgcaacaagcaggc
gaaacattgcagataaatggccgagactgtgtgtttttcccagcactgaccgcgttgact
ggcgctgtgtgtgcggcactgccaatgccacaaagtcggcagcagacattacagcgcctg
gccgattatctgcaaaccgtaactcagccttctaccgccgaccaagcgttattagacgac
tggcaaacccttaaaggcatcggcccgtggaccgttgcttatgccgcaatgcgggggctt
tcagcgcctgatgttttgttaagcggtgatttggtggtcaaaaaacaattactacagttg
ttgccagcaactgccgccgcagacatgaaaaccacaatgcagcagattgtggccaccgca
tcgccttggggcagttatctgacgttaactctctggcagcaagcggctgccaataatact
accaataaccctaatagtgacaatcgtcggagtcgcatatga
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