Shewanella dokdonensis: KHX94_02620
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Entry
KHX94_02620 CDS
T07469
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sdk
Shewanella dokdonensis
Pathway
sdk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KHX94_02620 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdk03021
]
KHX94_02620 (rpoD)
Transcription machinery [BR:
sdk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KHX94_02620 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QVK23640
UniProt:
A0ABX8DG38
LinkDB
All DBs
Position
552340..554193
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AA seq
617 aa
AA seq
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MDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIKVFEEAP
DADDIMMSEDNTDDDAAEEAAAALASVENELGRTTDPVRMYMREMGTVELLTREGEIQIA
KRIEEGINEVQGSVAEYPQAISMILEQYDQYEADQLRLSDIISGFVNPDEDDMAPTATHI
GSELSDDDLDDEDDLDDDDEDGDNSDSEDDDGSKGPDPEEARERFAQLRAAYENSLKIIA
EKGRNHPHAVGALFEIGEIFKEFRLVPKQFDRLVKSMRAMMDKVRVQERLIMKLCVEQAK
MPKKNFIKLFGGNETDISWFQKEASAAKAYSDALKAVEEDVVRCHSKLAAIEAETGLSIT
AIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPSPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSAT
SESLKQATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEILKSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggatcatactccgcagtcgcaacttaaactgttgctcgcaaaaggtaaagagcaaggt
tatctaacctatgcagaagtgaacgatcacttacctgccgacatggtcgattcagaccag
atcgaagatattatccagatgataaatgacatgggtatcaaggtgtttgaagaagcgcct
gacgccgatgacattatgatgtctgaagacaacactgacgatgacgcagcagaagaagct
gctgctgcgctggcttcagttgaaaacgaactgggacgtactaccgatcctgtgcgcatg
tatatgcgcgaaatggggaccgtagaattgttaacccgcgagggtgaaatccagatcgct
aagcgtatcgaagaagggattaacgaagtccaaggttctgtggcggaatatccacaagct
atttcaatgatcctggaacaatatgatcaatatgaagccgatcagttgcgtctgtctgac
attatctctggatttgtaaatcctgatgaagatgacatggcccctaccgccactcatatc
ggttccgaactgtctgatgatgatttagacgatgaagatgatctcgatgatgatgacgaa
gatggcgacaactccgacagcgaggatgatgacggttcaaaaggacctgatcctgaagaa
gcgcgtgaacgtttcgcacagctacgtgctgcctacgaaaactcactgaaaatcatcgcc
gaaaaaggtcgtaatcacccacatgccgtaggagcactgtttgaaattggcgaaatcttc
aaagagtttcgtttagttccaaaacagtttgatcgcttagttaaaagcatgcgtgccatg
atggacaaagtgcgcgtgcaagaacggctgatcatgaagctgtgcgttgaacaagcgaag
atgccaaagaaaaactttatcaagttgttcggtggcaacgaaaccgatattagctggttc
cagaaagaggctagcgcggccaaagcgtattccgatgcactgaaagctgtagaagaagac
gttgtccgttgccatagcaaactggcagcgatagaggccgaaaccggtctatcgattacc
gcgatcaaggatatcagccgccgtatgagtatcggcgaagcgaaggctcgccgtgccaag
aaagagatggtggaagctaacctgcgtctggttatttctattgcgaagaaatacaccaac
cgcggtctgcaattcctagatcttattcaggaaggcaacatcggtttgatgaaggccgta
gataaatttgaataccgccgtggttacaaattttctacctatgctacttggtggatccgt
caggcaatcacccgttcaatcgctgaccaagcacgtaccattcgtattccggtacacatg
attgaaaccatcaacaagctgaaccgtatttcacggcagatgctgcaagagatggggcga
gagccgtcaccagaagagctggctgaacgcatgatgatgcctgaggataaaatccgtaag
gtgctcaaaattgccaaagagccaatctccatggaaacccctatcggtgatgatgaagat
tcgcatctgggtgactttattgaagacaccactctggaactgccactggacagcgccacc
agcgaaagtctgaaacaagcaactcatgaagtgctggcaggtttgaccgcacgtgaagct
aaagtgttgcgtatgcgtttcggtatcgacatgaacaccgaccacacattggaagaagta
ggtaaacagttcgacgttactcgtgaacgtattcgtcagattgaagcaaaggcgttgcga
aaactgcgccacccaagtcgctcagaaattctgaaatccttcttggatgaataa
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