KEGG   Shewanella dokdonensis: KHX94_03750
Entry
KHX94_03750       CDS       T07469                                 
Symbol
ribD
Name
(GenBank) bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
sdk  Shewanella dokdonensis
Pathway
sdk00740  Riboflavin metabolism
sdk01100  Metabolic pathways
sdk01110  Biosynthesis of secondary metabolites
sdk01240  Biosynthesis of cofactors
sdk02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:sdk00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    KHX94_03750 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    KHX94_03750 (ribD)
Enzymes [BR:sdk01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     KHX94_03750 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     KHX94_03750 (ribD)
SSDB
Motif
Pfam: RibD_C ATP-cone Zn_ribbon_NrdR dCMP_cyt_deam_1 MafB19-deam Inv-AAD POTRA
Other DBs
NCBI-ProteinID: QVK23801
LinkDB
Position
complement(784598..786199)
AA seq 533 aa
MTCAGGMMHCPFCSATDTKVIDSRLVADGHQVRRRRECTLCHERFTTFESAELVMPRVIK
RDGSRQPFDEDKLRGGMLRAAEKRPVSIDKIEEAINRIKSALRATGEREVTSEMIGNLMM
DQLIELDKVAYIRFASVYRAFEDVSEFGDAIASLAEEITMWSTTDIAMMSRAIMLARRGR
YTTRPNPNVGCVMVDSHGTIVGEGWHQRAGGPHAEVNAWRMAGDKARGATAYVTLEPCSH
YGRTPPCAKGLIEHGLKRVVIAMTDPNPQVAGRGIAMLQDAGIEVVSGLLADEARQLNPG
FLSRMERGRPYVTVKLAASLDGKTALANGESKWITGTAARQDVQRLRALNCAVITGIGTV
LADDPSMNVRYPQLGYLQQQLSEDELLQPLRVVLDSACRMPLNARLLQLPGAVLLVSCQP
YPSEFIKALPAHVQCVQFPGTDGRIDLAALLQHLGQDCNSVLVEAGAILCGAFVSSGLAD
QLILYQAPKILGAAGRNLLQLPSFQTLSQIPALQLIEQRKVGVDNRLTLKLGC
NT seq 1602 nt   +upstreamnt  +downstreamnt
ttgacttgcgcaggaggcatgatgcattgtccattttgcagtgcgaccgataccaaagtg
attgattctaggttggtggccgatggtcatcaggttcgccggcggcgtgagtgtacttta
tgtcacgaacgttttaccacctttgaaagcgcggaattggtgatgcctcgggtgatcaaa
cgtgatggttcccgccaaccgtttgatgaagacaaactgcgtggcggcatgttacgtgcc
gccgaaaagcgcccggtgtctatcgataaaatcgaagaagccatcaaccggatcaaatcg
gcactgcgtgccacaggtgagcgcgaagtcacctctgagatgattggcaatctgatgatg
gatcagctgattgagctagataaagtcgcttatatccgctttgcctctgtgtatcgcgct
tttgaggatgtctcggagtttggtgacgctatcgccagcctggcagaagaaataaccatg
tggtcaacaactgatatcgccatgatgagccgggcaattatgctggctcgccgtggccgt
tataccactcgccccaatcccaacgttggctgcgttatggtcgatagtcatggcaccata
gttggagaaggttggcatcagcgcgcgggtggcccgcatgccgaagttaatgcttggcgc
atggcgggcgataaagcccgcggtgctacggcttatgtcacgctggagccttgtagtcac
tatgggcgtacgccgccttgtgctaaaggcctaattgagcacggcctgaaacgggtagtg
attgccatgactgaccctaacccgcaggtggccggccgcggtattgctatgttgcaagat
gcgggaatcgaagtcgtcagcggcttgttagccgacgaagccagacaactgaatccagga
tttttatcacggatggaacgtggccggccgtatgtgacggtaaaactggcggccagtctt
gacggtaaaaccgcgctggcgaacggcgagtcaaaatggattactggcaccgcagctcgg
caagatgttcagcggctacgcgcattaaactgtgcagttatcaccggcattggaactgtg
ctggctgatgatccttccatgaatgtgcgttatccgcagttgggatatttgcagcaacaa
ctcagcgaagatgagctgttacaacccttacgggtggtgctggatagtgcttgtcggatg
ccgcttaatgcccgcctacttcagttacctggcgcggtgctgctggtgagttgccagcca
tatccctctgaatttatcaaggcgctgccagcgcatgtgcaatgtgtgcagttccccggc
actgatggccgtatcgatttagcggcgctgctgcaacatctggggcaagactgcaactca
gtattagtcgaagctggtgctattttatgtggcgcttttgtgagtagtggcttggccgat
cagctaattttgtatcaagctcccaaaattcttggcgctgctggccgcaatttattgcag
ttgccgtcattccagacgctgtcacaaattccagcactacaattaattgaacaacgtaaa
gtcggcgtcgataatcgcctgacgctgaaattagggtgttaa

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