Shewanella dokdonensis: KHX94_04490
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Entry
KHX94_04490 CDS
T07469
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sdk
Shewanella dokdonensis
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdk03016
]
KHX94_04490 (truB)
Enzymes [BR:
sdk01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
KHX94_04490 (truB)
Transfer RNA biogenesis [BR:
sdk03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
KHX94_04490 (truB)
Prokaryotic type
KHX94_04490 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Pus10_C
Motif
Other DBs
NCBI-ProteinID:
QVK23913
LinkDB
All DBs
Position
complement(945474..946424)
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AA seq
316 aa
AA seq
DB search
MGKRPKGRFVDGVVLLDKPTGMSSNHALQRVKRIYNAVKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDADKRYLVTAKLGIRTDTSDADGEVVSTRPLTFSSAQLETALAHFRGDTMQ
VPSMFSALKYQGQPLYKYAREGKTVPREARPITVYELKFIALKDDELTLEIHCSKGTYIR
TIVDDLGEMLGCGAHVIMLRRLQVGRYPTERMVTLAQLQQLLDDAIAQDVVPSQVLDPLL
LAADAAVADLDECNVPDALGVYLLNGNPVRVNGLKADALVRITLGEAHRFIGVGCMNDDG
LLAPKRLMVMHDTSAD
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaacgacctaagggccgtttcgtggatggcgtggtgctgttagataaacccaca
ggtatgagttccaatcatgccttgcagcgggtcaagcggatttataatgcggtgaaagct
ggccatactggtgcactggatcctttagcgaccggaatgctgcccatctgtctgggggaa
gcaaccaagttctcacagcatctattagatgcagataaacgctatttggttacagctaag
cttggcattcgtaccgataccagcgatgcggatggtgaagtggtcagcacccggccgttg
actttcagttcggcacaactcgaaaccgcgttagcacactttcgtggggacactatgcag
gtgccctcaatgttttccgcgctgaaatatcaagggcaaccgctttataaatatgctcgt
gagggcaagacggtaccaagagaagcgcgtcccatcaccgtatatgaactcaaattcatc
gccctgaaagatgatgaactgacgctggaaattcactgctctaaaggcacctatattcgc
actattgtagatgaccttggcgaaatgcttggttgtggcgcgcatgtcatcatgttgcga
cgcttacaggtggggcgttatcccaccgaacgcatggtgaccttagcgcaactgcaacag
ttgttagatgatgcgatagctcaagatgttgtcccgtcccaggtgttggatccgctgtta
ttagctgccgatgcggcggttgccgatcttgatgaatgcaatgtgcctgacgcattggga
gtttatctgctcaatggtaatccggtcagggttaacggactcaaagcagatgctctggtg
cgtatcacgctaggcgaagcgcatcggtttattggtgtcggttgtatgaatgacgatggt
ttactggcacctaaacgtttgatggtgatgcacgacactagcgctgactga
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