Shewanella dokdonensis: KHX94_07020
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Entry
KHX94_07020 CDS
T07469
Name
(GenBank) retention module-containing protein
Organism
sdk
Shewanella dokdonensis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LapA
Calx-beta
Motif
Other DBs
NCBI-ProteinID:
QVK24285
LinkDB
All DBs
Position
1457208..1466654
Genome browser
AA seq
3148 aa
AA seq
DB search
MNTLITQQDSQIKNLNGQIAVVINGERHLVKEGEFIPKGAELILSDNASVNLVQADGNSV
MVDGTAQQGEQGETAATDAEIQQLQDLIAAGEDPTANLPETAAGNEISGGGDSGYVAVTR
DGSEVLASSGYDTATFTLDNTNPPDDVQPTLIQVLPPSVVSLSAPAQVDEGGQITYSASV
NNVPQSDLVLTLSNGATITIAAGQSTGTVTVDAPSDDVYQDGETLTVNVTGSTGGNYENL
DLGNSVDTQVNDTIDTTTVTLTAPAQVDEGGQITYSASVNNVPQSDLVLTLSNGATITIA
AGQSTGTVTVDAPSDDVYQDGETLTVNVTGSTGGNYENLDLGNSVDTQVNDTIDTTTVTL
SAPAQVDEGGQITYSASVNNVPQSDLVLTLSNGATITIAAGQSTGTVTVDAPSDDVYQDG
ETLTVNVTGSTGGNYENLDLGNSVDTQVNDTIDTTTVTLTAPAQVDEGGQITYSASVNNV
PQSDLVLTLSNGATITIAAGQSTGTVTVDAPSDDVYQDGETLTVNVTGSTGGNYENLDLG
NSVDTQVNDTIDTTTVTLSAPAQVDEGGQITYSASVNNVPQSDLVLTLSNGATITIAAGQ
STGTVTVDAPSDDVYQDGETLTVNVTGSTGGNYENLDLGNSVDTQVNDTIDTTTVTLTAP
AQVDEGGQITYSASVNNVPQSDLVLTLSNGATITIAAGQSTGTVTVDAPSDDVYQDGETL
TVNVTGSTGGNYENLDLGNSVDTQVNDTIDTTTVTLTAPEQVNEGGQITYSASVNNVPQS
DLVLTLSNGATITIAAGQSTGTVTVDAPSDDVYQDGETLTVNVTGSTGGNYENLDLGNSV
DTQVNDTIDTTTVTLTAPAQVDEGGQITYSASVNNVPQSDLVLTLSNGATITIAADQSTG
TVTVDAPSDDVYQDGETLTVNVTGSTGGNYENLDLGNSVDTQVNDTIDTTTVTLTAPAQV
DEGGQITYSASVNNVPQSDLVLTLSNGATITIAAGQSTGTVTVDAPSDDVYQDGETLTVN
VTGSTGGNYENLDLGNSVDTQVNDTIDTTTVTLTAPEQVNEGGQITYSASVNNVPQSDLV
LTLSNGATITIAAGQSTGTVTVDAPSDDVYQDGETLTVNVTGSTGGNYENLDLGNSVDTQ
VNDTIDTTTVTLTAPEQVNEGGQITYSASVNNVPQSDLVLTLSNGATITIAAGQSTGTVT
VDAPSDDVYQDGETLTVNVTGSTGGNYENLDLGNSVDTQVNDTIDTTTVTLTAPAQVDEG
GQITYSASVNNVPQSDLVLTLSNGATITIAAGQSTGTVTVDAPSDDVYQDGETLTVNVTG
STGGNYENLDLGNSVDTQVNDTIDTTTVTLTAPAQVDEGGQITYSASVNNVPQSDLVLTL
SNGATITIAAGQSTGTVTVDAPSDDVYQDGETLTVNVTGSTGGNYENLDLGNSVDTQVND
TIDTTTVTLTAPEQVNEGGQITYSASVNNVPQSDLVLTLSNGATITIAAGQSTGTVTVDA
PSDDVYQDGETLTVNVTGSTGGNYENLDLGNSVDTQVNDTIDTTTVTLTAPEQVNEGGQI
TYSASVNNVPQSDLVLTLSNGATITIAAGQSTGTVTVDAPSDDVYQDGETLTVNVTGSTG
GNYENLDLGNSVDTQVNDTIDTTTVTLTAPAQVDEGGQITYSASVNNVPQSDLVLTLSNG
ATITIAAGQSTGTVTVDAPSDDVYQDGETLTVNVTGSTGGNYENLDLGNSVDTQVNDTID
TTTVTLTAPAQVDEGGQITYSASVNNVPQSDLVLTLSNGATITIAAGQSTGTVTVDAPSD
DVYQDGETLTVNVTGSTGGNYENLDLGNSVDTQVNDTIDTTTVTLTAPEQVNEGGQITYS
ASVNNVPQSDLVLTLSNGATITIAAGQSTGTVTVDAPSDDVYQDGETLTVNVTGSTGGNY
ENLDLGNSVDTQVNDTIDTTTVTLTAPAQVDEGGQITYSASVNNVPQSDLVLTLSNGATI
TIAAGQSTGTVTVDAPSDDVYQDGETLTVNVTGSTGGNYENLDLGNSVDTQVNDTIDTTT
VTLTAPAQVDEGGQITYSASVNNVPQSDLVLTLSNGATITIAAGQSTGTVTVDAPSDDVY
QDGETLTVNVTGSTGGNYENLDLGNSVDTQVNDTIDTTTVTLTAPEQVNEGGQITYSASV
NNVPQSDLVLTLSNGATITIAAGQSTGTVTVDAPSDDVYQDGETLTVNVTGSTGGNYENL
DLGNSVDTQVNDTIDTTTVTLTAPAQVNEGGQITYSASVNNVPQSDLVLTLSNGATITIA
AGQSTGTVTVDAPSDDVYQDGETLTVNVTGSTGGNYENLDLGNSVDTQVNDTIDTTTVTL
TAPAQVDEGGQITYSASVNNVPQSDLVLTLSNGATITIAAGQSTGTVTVDAPSDDVYQDG
ETLTVNVTGSTGGNYENLDLGNSVDTQVNDTIDTTTVTLTAPAQVDEGGQITYSASVNNV
PQSDLVLTLSNGATITIAAGQSTGTVTVDAPSDDVYQDGETLTVNVTGSTGGNYENLDLG
NSVDTQVNDTIDTVFAQISVDQSSVTEGEAITYTVTLVDANNNPVTIPDGASVTVALSWG
GTASAADVDHLPTSVTISGDSQQSFTVNTLNDGIYENSENLSVAISGVTDVDNTLEQLEI
GADNSADTTIIDAQLPPSIGNITNVSVSEEGLPDGVPDTIGAPDTTNAVIANGSIELQDP
NNDELQVTLSGPDGMTSGGVAVTWQWDSDTQTLTGSAGSVVVMTISLTAPTGNSSGTWDY
TVTLEAPLDHPVANIEDVLNLNFGINVADGSGASDSSSFQVAVEDDAPTVDVSPLADATN
SVGIYDGIMNTLGADNHYSADLSGNVNGWDASTQTYFGASDITAGGKTVFFFVDPDNSQQ
LLAYTSNENTVTAYDQTNPNQTLIFTLNTDPNTDSYQLNIQHSIDKLDEITIANLNGGQG
GISGEVYVTFDSSQGSYDVYNDPNDLPSDADVAFTLYGRNSDGQLVDVNGTNNGFGVANP
WVDGGETLIIDYTATVASASFNFDVQNGPDVIHFKAYDANGQLLGEDDIAPNGIIGDMGA
IAYIELTAVTSDANPNARFQLTGTSAKEIVSATEPVDMNFDVVVTDGDGDKTNAELNIHL
DAPGEKHPQLLPLTQWQRWMNLVYRTIT
NT seq
9447 nt
NT seq
+upstream
nt +downstream
nt
atgaataccttaattacccaacaagacagtcaaatcaaaaacttgaatggacaaatcgcg
gttgttatcaatggcgaacgacatttggttaaagaaggtgaattcattcccaaaggagct
gaattgatcttaagtgataatgccagtgtcaacctcgttcaggctgatggtaacagcgtc
atggttgatggtactgcacagcagggagagcaaggagaaactgccgccactgatgcagaa
atccagcaactacaagatttgattgctgcgggagaggatcctacagctaacctgccagaa
accgctgccggtaatgaaatctctggaggtggtgactccggctatgtagcggttactcgt
gatggcagcgaagtactcgcaagttctggctacgataccgcaacgtttacattggataat
acaaatccaccagacgacgttcaacctactctcatccaagtgcttccaccaagcgtagtt
tctttaagcgcccccgcgcaggtcgatgaaggcggtcagatcacttacagcgccagcgtt
aacaacgtgccgcagtctgacttggtactgaccctgtctaacggggccaccatcaccatc
gcggccggccagagcactggcaccgtcaccgtggatgcaccgagcgatgatgtttatcag
gacggtgaaaccttgaccgtcaatgtcactggcagcaccggcggtaactatgaaaacctc
gacctgggcaacagcgttgacacccaggtgaacgacaccattgataccaccaccgtcacc
ctgaccgcccccgcgcaggtcgatgaaggcggtcagatcacttacagcgccagcgttaac
aacgtgccgcagtctgacttggtgctgaccctgtctaacggggccaccatcaccatcgcg
gctggccagagcactggcaccgtcaccgtggatgcaccgagcgatgatgtttatcaggac
ggtgaaaccttgaccgtcaatgtcactggcagcaccggcggtaactatgaaaacctcgac
ctgggcaacagcgttgacacccaggtgaacgacaccattgataccaccaccgtcaccctg
agcgcccccgcgcaggtcgatgaaggcggccagatcacttacagcgccagcgttaacaac
gtgccgcagtctgacttggtgctgaccctgtctaacggggccaccatcaccatcgcggcc
ggccagagcactggcaccgtcaccgtggatgcaccgagcgatgatgtttatcaggacggt
gaaaccttgaccgtcaatgtcactggcagcaccggcggtaactatgaaaacctcgacctg
ggcaacagcgttgacacccaggtgaacgacaccattgataccaccaccgtcaccctgacc
gcccccgcgcaggtcgatgaaggcggtcagatcacttacagcgccagcgttaacaacgtg
ccgcagtctgacttggtgctgaccctgtctaacggggccaccatcaccatcgcggctggc
cagagcactggcaccgtcaccgtggatgcaccgagcgatgatgtttatcaggacggtgaa
accttgaccgtcaatgtcactggcagcaccggcggtaactatgaaaacctcgacctgggc
aacagcgttgacacccaggtgaacgacaccattgataccaccaccgtcaccctgagcgcc
cccgcgcaggtcgatgaaggcggccagatcacttacagcgccagcgttaacaacgtgccg
cagtctgacttggtgctgaccctgtctaacggggccaccatcaccatcgcggccggccag
agcactggcaccgtcaccgtggatgcaccgagcgatgatgtttatcaggacggtgaaacc
ttgaccgtcaatgtcactggcagcaccggcggtaactatgaaaacctcgacctgggcaac
agcgttgacacccaggtgaacgacaccattgataccaccaccgtcaccctgaccgcgccc
gcgcaggtcgatgaaggcggtcagatcacttacagcgccagcgttaacaacgtgccgcag
tctgacttggtgctgaccctgtctaacggggccaccatcaccatcgcggccggccagagc
actggcaccgtcaccgtggatgcaccgagcgatgatgtttatcaggacggtgaaaccttg
accgtcaatgtcactggcagcaccggcggtaactatgaaaacctcgacctgggcaacagc
gttgacacccaggtgaacgacaccattgataccaccaccgtcaccctgaccgcgcctgag
caggtcaatgaaggcggtcagatcacttacagcgccagcgttaacaacgtgccgcagtct
gacttggtactgaccctgtctaacggggccaccatcaccatcgcggctggccagagcact
ggcaccgtcaccgtggatgcaccgagcgatgatgtttatcaggacggcgaaaccttgacc
gtcaatgtcactggcagcaccggtggcaactatgaaaacctcgacctgggcaacagcgtt
gacacccaggtgaacgacaccattgataccaccaccgtcaccctgaccgccccggcgcag
gtcgatgaaggcggtcagatcacttacagcgccagcgttaacaacgtgccgcagtctgac
ttggtactgaccctgtctaacggggccaccatcaccatcgcggctgaccagagcactggc
accgtcaccgtggatgcaccgagcgatgatgtttatcaggacggtgaaaccttgaccgtc
aatgtcactggcagcaccggcggtaactatgaaaacctcgacctgggcaacagcgttgac
acccaggtgaacgacaccattgataccaccaccgtcaccctgaccgcccccgcgcaggtc
gatgaaggcggccagatcacttacagcgccagcgttaacaacgtgccgcagtctgacttg
gtgctgaccctgtctaacggggccaccatcaccatcgcggccggccagagcactggcacc
gtcaccgtggatgcaccgagcgatgatgtttatcaggacggcgaaaccttgaccgtcaat
gtcactggcagcaccggcggtaactatgaaaacctcgacctgggcaacagcgttgacacc
caggtgaacgacaccattgataccaccaccgtcaccctgaccgcgcctgagcaggtcaat
gaaggcggtcagatcacttacagcgccagcgttaacaacgtgccgcagtctgacttggtg
ctgaccctgtctaacggggccaccatcaccatcgcggctggccagagcactggcaccgtc
accgtggatgcaccgagcgatgatgtttatcaggacggcgaaaccttgaccgtcaatgtc
actggcagcaccggcggtaactatgaaaacctcgacctgggcaacagcgttgacacccag
gtgaacgacaccattgataccaccaccgtcaccctgaccgcgcctgagcaggtcaatgaa
ggcggtcagatcacttacagcgccagcgttaacaacgtgccgcagtctgacttggtgctg
accctgtctaacggggccaccatcaccatcgcggccggccagagcactggcaccgtcacc
gtggatgcaccgagcgatgatgtttatcaggacggtgaaaccttgaccgtcaatgtcact
ggcagcaccggcggtaactatgaaaacctcgacctgggcaacagcgttgacacccaggtg
aacgacaccattgataccaccaccgtcaccctgaccgcccccgcgcaggtcgatgaaggc
ggtcagatcacttacagcgccagcgttaacaacgtgccgcagtctgacttggtactgacc
ctgtctaacggggccaccatcaccatcgcggccggccagagcactggcaccgtcaccgtg
gatgcaccgagcgatgatgtttatcaggacggtgaaaccttgaccgtcaatgtcactggc
agcaccggcggtaactatgaaaacctcgacctgggcaacagcgttgacacccaggtgaac
gacaccattgataccaccaccgtcaccctgaccgcccccgcgcaggtcgatgaaggcggt
cagatcacttacagcgccagcgttaacaacgtgccgcagtctgacttggtgctgaccctg
tctaacggggccaccatcaccatcgcggccggccagagcactggcaccgtcaccgtggat
gcaccgagcgatgatgtttatcaggacggcgaaaccttgaccgtcaatgtcactggcagc
accggcggtaactatgaaaacctcgacctgggcaacagcgttgacacccaggtgaacgac
accattgataccaccaccgtcaccctgaccgcgcctgagcaggtcaatgaaggcggtcag
atcacttacagcgccagcgttaacaacgtgccgcagtctgacttggtgctgaccctgtct
aacggggccaccatcaccatcgcggctggccagagcactggcaccgtcaccgtggatgca
ccgagcgatgatgtttatcaggacggcgaaaccttgaccgtcaatgtcactggcagcacc
ggcggtaactatgaaaacctcgacctgggcaacagcgttgacacccaggtgaacgacacc
attgataccaccaccgtcaccctgaccgcgcctgagcaggtcaatgaaggcggtcagatc
acttacagcgccagcgttaacaacgtgccgcagtctgacttggtgctgaccctgtctaac
ggggccaccatcaccatcgcggccggccagagcactggcaccgtcaccgtggatgcaccg
agcgatgatgtttatcaggacggtgaaaccttgaccgtcaatgtcactggcagcaccggc
ggtaactatgaaaacctcgacctgggcaacagcgttgacacccaggtgaacgacaccatt
gataccaccaccgtcaccctgaccgcccccgcgcaggtcgatgaaggcggccagatcact
tacagcgccagcgttaacaacgtgccgcagtctgacttggtactgaccctgtctaacggg
gccaccatcaccatcgcggccggccagagcactggcaccgtcaccgtggatgcaccgagc
gatgatgtttatcaggacggcgaaaccttgaccgtcaatgtcactggcagcaccggcggc
aactatgaaaacctcgacctgggcaacagcgttgacacccaggtgaacgacaccattgat
accaccaccgtcaccctgaccgcgcccgcgcaggtcgatgaaggcggtcagatcacttac
agcgccagcgttaacaacgtgccgcagtctgacttggtgctgaccctgtctaacggggcc
accatcaccatcgcggccggccagagcactggcaccgtcaccgtggatgcaccgagcgat
gatgtttatcaggacggtgaaaccttgaccgtcaatgtcactggcagcaccggcggtaac
tatgaaaacctcgacctgggcaacagcgttgacacccaggtgaacgacaccattgatacc
accaccgtcaccctgaccgcgcctgagcaggtcaatgaaggcggtcagatcacttacagc
gccagcgttaacaacgtgccgcagtctgacttggtactgaccctgtctaacggggccacc
atcaccatcgcggctggccagagcactggcaccgtcaccgtggatgcaccgagcgatgat
gtttatcaggacggtgaaaccttgaccgtcaatgtcactggcagcaccggcggtaactat
gaaaacctcgacctgggcaacagcgttgacacccaggtgaacgacaccattgataccacc
accgtcaccctgaccgcccccgcgcaggtcgatgaaggcggccagatcacttacagcgcc
agcgttaacaacgtgccgcagtctgacttggtactgaccctgtctaacggggccaccatc
accatcgcggctggccagagcactggcaccgtcaccgtggatgcaccgagcgatgatgtt
tatcaggacggcgaaaccttgaccgtcaatgtcactggcagcaccggcggtaactatgaa
aacctcgacctgggcaacagcgttgacacccaggtgaacgacaccattgataccaccacc
gtcaccctgaccgcccccgcgcaggtcgatgaaggcggtcagatcacttacagcgccagc
gttaacaacgtgccgcagtctgacttggtgctgaccctgtctaacggggccaccatcacc
atcgcggctggccagagcactggcaccgtcaccgtggatgcaccgagcgatgatgtttat
caggacggtgaaaccttgaccgtcaatgtcactggcagcaccggcggtaactatgaaaac
ctcgacctgggcaacagcgttgacacccaggtgaacgacaccattgataccaccaccgtc
accctgaccgcgcctgagcaggtcaatgaaggcggtcagatcacttacagcgccagcgtt
aacaacgtgccgcagtctgacttggtgctgaccctgtctaacggggccaccatcactatc
gcggccggccagagcactggcaccgtcaccgtggatgcaccgagcgatgatgtttatcag
gacggtgaaaccttgaccgtcaatgtcactggcagcaccggcggtaactatgaaaacctc
gacctgggcaacagcgttgacacccaggtgaacgacaccattgataccaccaccgtcacc
ctgaccgcgcccgcgcaggtcaatgaaggcggtcagatcacttacagcgccagcgttaac
aacgtgccgcagtctgacttggtgctgaccctgtctaacggggccaccatcactatcgcg
gccggccagagcactggcaccgtcaccgtggatgcaccgagcgatgatgtttatcaggac
ggtgaaaccttgaccgtcaatgtcactggcagcaccggcggtaactatgagaacctcgac
ctgggcaacagcgttgacacccaggtgaacgacaccattgataccaccaccgtcaccctg
accgcgcccgcgcaggtcgatgaaggcggtcagatcacttacagcgccagcgttaacaac
gtgccgcagtctgacttggtgctgaccctgtctaacggggccaccatcactatcgcggcc
ggccagagcactggcaccgtcaccgtggatgcaccgagcgatgatgtttatcaggacggt
gaaaccttgaccgtcaatgtcactggcagcaccggcggtaactatgagaacctcgacctg
ggcaacagcgttgacacccaggtgaacgacaccattgataccaccaccgtcaccctgacc
gcgcccgcgcaggtcgatgaaggcggtcagatcacttacagcgccagcgttaacaacgtg
ccgcagtctgacttggtgctgaccctgtctaacggggccaccatcactatcgcggccggc
cagagcactggcaccgtcaccgtggatgcaccgagcgatgatgtttatcaggacggtgaa
accttgaccgtcaatgtcactggcagcaccggcggtaactatgaaaacctcgacctgggc
aacagcgttgacacccaggtgaacgacaccattgataccgtttttgcccaaattagtgtt
gatcagtccagtgttaccgaaggtgaagcaatcacttacacagtgaccttagtggatgcc
aataataacccagtaaccatacctgatggtgcatcagtaactgtcgcccttagttgggga
ggtacagcatctgccgcagatgttgatcatttaccaacaagtgtgactatttctggtgat
agccagcaaagctttaccgttaatactctcaatgatggtatctatgaaaatagtgagaac
ttatccgttgccataagcggagtgactgacgttgataatactctcgagcagttggaaatc
ggtgcggataacagcgccgataccaccatcattgatgcgcaactcccgccaagcattggc
aatatcaccaatgtatcggtttcagaagaagggttgcctgatggtgtacctgatacaatt
ggtgctcccgatacaacaaatgcggtgatcgctaatggttctattgaactacaggatcct
aacaatgatgagttacaagtaacactcagtggccctgatggcatgacttctggtggtgtt
gcggttacttggcaatgggattccgatactcagactctgactggctctgctggctctgta
gtagtaatgaccatatcacttacagcaccgacaggtaacagtagtgggacttgggactat
acagttacattggaagcgccgctcgatcatcctgtcgctaatatagaagatgtcttgaac
ctaaacttcggtattaacgttgctgatggatctggtgcctctgactcaagttccttccaa
gtagcagttgaggatgatgcaccaaccgttgatgtcagtccacttgctgatgcaacaaac
agcgttggcatttatgatggcatcatgaacactcttggtgcagataatcactatagtgct
gacttgagtggtaatgttaacggttgggatgctagcacccaaacttactttggggcttca
gatatcactgctggaggcaaaactgtcttcttctttgtggatccagataattcgcaacaa
ctgcttgcttataccagcaatgaaaatacagttaccgcatatgatcaaactaacccaaat
cagaccctgatctttaccttaaacacagatccaaacaccgatagctatcagttaaacata
caacatagcatagataagcttgatgaaatcaccatcgctaatttgaatggtgggcaagga
ggcattagcggtgaggtttatgtaacgtttgacagcagccagggtagttatgatgtttat
aacgatccaaatgatcttccttccgatgccgacgttgcctttactctatatgggcgtaat
agcgacggacagttagttgatgtcaatggtaccaacaatggctttggtgtggctaaccca
tgggttgatggtggcgaaacactgattattgactacacggcaacagttgctagtgctagt
tttaatttcgacgttcaaaacggccctgatgtaatacattttaaagcctatgatgccaat
ggtcagcttctcggagaagacgacatcgcgcctaatgggatcatcggtgatatgggggcc
atcgcttatattgaactgacggctgtgacatcagatgcaaaccctaatgctagattccaa
ttaacagggacttccgccaaagaaattgtcagcgctacagaaccggtagacatgaacttt
gatgtagtagtcaccgatggcgatggcgataaaactaatgctgagctgaacattcatcta
gatgccccaggggagaaacacccacagctattacctcttacgcaatggcaacgctggatg
aatttggtttacaggacgataacctag
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