Shewanella dokdonensis: KHX94_07505
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Entry
KHX94_07505 CDS
T07469
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sdk
Shewanella dokdonensis
Pathway
sdk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KHX94_07505 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdk03019
]
KHX94_07505 (recQ)
03400 DNA repair and recombination proteins [BR:
sdk03400
]
KHX94_07505 (recQ)
Enzymes [BR:
sdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KHX94_07505 (recQ)
Messenger RNA biogenesis [BR:
sdk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KHX94_07505 (recQ)
DNA repair and recombination proteins [BR:
sdk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KHX94_07505 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HEM4
Helicase_Sgs1
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
QVK24788
UniProt:
A0ABX8DJ11
LinkDB
All DBs
Position
complement(1582904..1584745)
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AA seq
613 aa
AA seq
DB search
MEHALYSPLASPPQKPVEPLEQTLRQVFGYQSFRAGQRDVIEQVLAGKDCLVVMPTGGGK
SLCYQLPALVMPGLTVVVSPLISLMKDQVDSLLQSGVNAAYLNSSLPREQQLQILRQLHQ
GDIRLLYISPERLLQPAFLERLQYLTVAMFAVDEAHCISQWGHDFRPEYAQLGILKQTFS
DVPIMALTATADNATRLDICQRLGIQPYTLLSSFDRPNIRYTVAEKLNAATQLRQFISAQ
HGASGIVYCSSRRRVDDVAERLRQQGFAAEAYHAGMSQEERSSVQERFLKDQLDIVVATV
AFGMGINKSNVRYVVHYDLPKSIESYYQETGRAGRDGLEAEALLLFEPADIGRVRHLIDQ
GSPGPQQEVELHKLNTMAAFAEAQTCRRQVLLHYFGEVADQPCGNCDICLDPPKRYNGTE
DAQKVLSCIYRLKQRFGINHLIEVLRGSSAATVTERGHDKLSTWGIGKDKPHEYWLSVIR
QLIHLGLINQDITRGSCLTLNDTARPVLRGSVALMLAEPRLTIAVSRRRHGHQAPLNYDR
KLFARLKVLRREVAEELDVPPYLVFNDATLAEMAALLPTCEAELLAVNGVGERKLARFGQ
QFLDEIVTYLAGE
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggaacacgcactttattctcctttggcatcgccgccgcaaaaacctgttgagccgtta
gagcaaacgctacggcaggtctttggttaccaaagttttcgtgccggtcagcgtgatgtc
atcgagcaggtgttggcagggaaagattgcctggtggttatgccaaccggtggcggcaaa
agcctgtgctatcagttgcccgcgttggtgatgccagggctcactgtggtggtatcaccg
ctgatttcgttgatgaaagatcaagtggatagtttgctgcaatctggcgtgaatgcggcc
tatctgaactcgtccttgccgcgtgagcaacagctacagatcctaagacagttacatcaa
ggtgacatccggttactgtatatttcacctgaacgtctattacagcctgcattcctggaa
cgcttgcaatacctgactgttgctatgtttgccgttgatgaagcccattgtatcagtcaa
tgggggcatgattttcgtccagaatatgcgcagttaggtattctaaaacagaccttctct
gacgtaccgattatggcattgaccgcgactgccgataacgctactcgcctagatatttgc
caacgtttaggtattcagccttacactttattgtccagttttgatcggcccaatatccgc
tataccgtggcggaaaaactgaatgctgcaacccagttacgccagtttatcagtgcgcaa
catggtgcatctggcattgtctattgctctagccgccgccgggtcgacgatgtggccgag
cgtctgcgccagcaaggttttgccgcagaggcttatcatgccggcatgtcccaggaagaa
cgcagtagcgtacaggagcgttttcttaaagatcagttggatattgtggttgctactgtg
gcctttggcatgggcattaataaatccaatgtgcgttatgtggtgcactatgatttgcct
aaaagtatcgaatcttactatcaggaaactggtcgggcggggcgcgatgggcttgaggct
gaggcactgctattgtttgaaccggcggatatcggtcgggtacgccatcttattgatcag
gggtctcccgggccacagcaagaggtggaacttcacaaactcaatactatggcggcgttt
gctgaagctcaaacctgccgacgacaggtattgctgcattattttggtgaagtagcagac
caaccttgcggtaactgtgatatctgccttgatccgccaaagcgttataacggcaccgaa
gatgcgcaaaaagtgctgtcttgtatctatcggttgaaacagcgttttggcatcaaccat
ctcattgaagtcttacgcggttcttctgccgcgacagtgactgaaagaggtcatgacaag
ctgtcaacgtggggcattggcaaagacaagcctcatgaatattggctaagtgtgattcgc
cagctgatccatctgggattgatcaatcaagacattacccgcggttcttgcttgactttg
aatgatacggcccgacccgtcttacgcggcagtgtggcgctgatgttagccgaaccacga
ctgacgatagcggtttcccggcgccgacatgggcatcaggcaccactgaactatgatcgt
aagctgttcgctcggttgaaagtgttacgccgagaagtcgccgaagagttggatgtgcca
ccctatctggtctttaacgatgccactctcgcggaaatggccgcattgttgcctacctgc
gaggctgaactgctggccgtgaacggcgtgggagaacgcaaactggcgcgatttgggcag
cagtttctcgatgagattgtcacttacctcgcgggtgaatga
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