Shewanella dokdonensis: KHX94_10680
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Entry
KHX94_10680 CDS
T07469
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sdk
Shewanella dokdonensis
Pathway
sdk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KHX94_10680 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdk03021
]
KHX94_10680 (rho)
03019 Messenger RNA biogenesis [BR:
sdk03019
]
KHX94_10680 (rho)
Transcription machinery [BR:
sdk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KHX94_10680 (rho)
Messenger RNA biogenesis [BR:
sdk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KHX94_10680 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
NACHT
AAA
AAA_25
Spore_III_AA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QVK21958
LinkDB
All DBs
Position
complement(2218690..2219952)
Genome browser
AA seq
420 aa
AA seq
DB search
MNLTELKNKSIADLVALAEEMNLENMARARKQDIIFSILKAHSKSGEDIFGGGVLEILQD
GFGFLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVNEVN
FDKPENSRNKILFENLTPLHAEERLRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPP
KAGKTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLVQGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNIENGGSLTIIATALIDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTPDELQKMWILRKILNPMDEVSAMEFLIDKLAMTKTNEEFFTAMKRAK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaactgaattaaaaaacaagtctattgctgacttagtcgctctcgccgaagaa
atgaacttggagaatatggcccgtgcccgcaagcaggacatcatattttctattcttaaa
gcccactccaaaagtggtgaagatattttcggtggcggcgtactggaaattctgcaagat
ggtttcggatttctacgcagtgccgatggttcctatctcgccggcccagacgatatctat
gtttctccaagtcagatccgtcgcttcaacatgcgaacgggcgatactatttttggcaaa
atccgtccgccaaaagaaggggaacgttatttcgccctgctgaaagtgaacgaagtcaac
ttcgacaaacctgaaaattcccgcaacaagatcctatttgaaaaccttacgccgctgcac
gcagaagagcgtttacgtatggaacgcggcaatggttcaaccgaagatatcactgcccgt
atattggatctgtgttcgcctattggtaagggtcagcgtggtttgattgtcgccccgcca
aaagccggtaagacattgctgctgcaaaacatcgctcagtccatcacctataacaatcct
gaagtggtattgatggtgttgctgatcgatgaacgtccagaagaagtgaccgaaatgcag
cgtctggtgcaaggtgaagtgattgcttcaaccttcgacgaacccgccagccgccatgtg
caggttgccgaaatggtgattgaaaaagccaagcgtctagtcgaacacaaaaaagatgtg
gtgatcctgctggactctatcactcgtctagcgcgggcatacaacacagtagtgccttca
tctggtaaggtattgactggtggtgtggatgctaacgccttgcatcgtcctaagcgcttc
tttggtgctgcccgtaatattgaaaacggtggcagcctgaccattatcgcgaccgcattg
atcgataccggttcaaagatggatgaagtgatttacgaagagtttaagggcacaggtaac
caagaactgcatttgtcgcgcaaagccgcagaaaaacgcgtgttcccggccatcgacttc
aatcgttcaggcactcgtcgtgaagagaaactgactacgccagatgaactgcagaaaatg
tggatcctgcggaaaatcctgaacccgatggatgaagtcagcgccatggaattcctgatc
gacaaactggcgatgaccaaaaccaatgaagaattctttaccgcgatgaaacgcgccaag
taa
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