Shewanella dokdonensis: KHX94_10690
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Entry
KHX94_10690 CDS
T07469
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sdk
Shewanella dokdonensis
Pathway
sdk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KHX94_10690 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdk03019
]
KHX94_10690 (rhlB)
Enzymes [BR:
sdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KHX94_10690 (rhlB)
Messenger RNA biogenesis [BR:
sdk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KHX94_10690 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QVK21960
LinkDB
All DBs
Position
2220635..2221918
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AA seq
427 aa
AA seq
DB search
MSETHLSQQKFADLPLHPEVIQALTENGFEYCTPIQALSLPVLLKGKDIAGQAQTGTGKT
LAFLVATFDYLLAHPAPENHQLNQPRAIIMAPTRELAIQIAKDGQLLSKHTGLKQGIVYG
GEGYDAQRKVLDAGVDILIGTTGRIIDYVRQGVINLGAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPAADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEELFYPSM
EDKIPLLLTLIEEDWPEKAIVFANTKHQCENLWGWLEGDGHRVGLLTGDVPQKKRLKILE
QFTKGELDILVATDVAARGLHIPHVSHVYNFDLPDDCEDYVHRIGRTGRAGEKGISVSFA
CEEYALNLPAIEAYIEHPIPLTSYDREALLDDIPAPVKLHRRAPRNKRERTQGSRPSGRR
PDRSRRN
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatttatctcaacaaaaatttgctgatctgccgctgcaccctgaggtg
attcaggcgctgacggagaacggcttcgaatactgtacgccaattcaggcgctgtcactg
ccggtgctattgaaaggcaaggatattgctggtcaggcacaaacgggtacaggaaaaaca
ttggcatttctggttgccacttttgattatctgctagctcatccggcccctgaaaatcat
cagctcaatcaaccccgcgccatcattatggccccgacaagagaattggcgatccagatt
gcgaaagatggccagttgctatctaagcatacgggcctaaaacagggaattgtttacggc
ggtgaaggttatgatgcccaacgtaaagtgttggatgctggggtcgacattctgattggc
accaccggacgaattatcgattatgtgcgtcaaggggtgatcaatttaggcgccattcag
gcggtggttctcgatgaggcggatcggatgttcgatctgggctttatcaaggacatccgc
ttcttattccggcgcatgcctgccgcagaccagcggctgaacatgctgttttcagccacg
ctgtcgatgaaggtacaggaactggcatatgaccatatgaacgacccggtcaaagtggaa
attgcgccagaagaaaagacctcaaagaacatcaaagaagagctgttttacccttcgatg
gaagataaaattccattgttattgaccttgattgaagaagactggccagaaaaagctatt
gtttttgccaataccaaacaccaatgtgaaaacctctggggttggcttgaaggtgatggt
catcgggtgggattactcactggcgatgtgccacagaagaaacgtctgaaaattctggaa
cagtttaccaagggcgaactggacattctggtagcgactgacgtggccgcccgcgggctg
catattccgcatgtttctcacgtctataactttgatttaccagatgactgcgaagattac
gtgcatcgcattggccgtactggccgtgccggtgaaaaagggatctccgtcagctttgcc
tgtgaggaatatgcgctgaacctgccggctattgaagcgtatattgagcatcccatcccg
ctcacatcctatgatcgtgaagccttgctcgatgatattccggcgccagtgaaactgcat
cgccgggctccccgtaataaaagagaacggacacaagggagtcgaccatcgggacgtcgc
cctgaccgtagccgcaggaactga
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