Shewanella dokdonensis: KHX94_11540
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Entry
KHX94_11540 CDS
T07469
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sdk
Shewanella dokdonensis
Pathway
sdk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KHX94_11540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdk03019
]
KHX94_11540
03009 Ribosome biogenesis [BR:
sdk03009
]
KHX94_11540
Enzymes [BR:
sdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KHX94_11540
Messenger RNA biogenesis [BR:
sdk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KHX94_11540
Ribosome biogenesis [BR:
sdk03009
]
Prokaryotic type
rRNA helicases
KHX94_11540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UTP25_NTPase-like
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QVK22093
LinkDB
All DBs
Position
complement(2405387..2407228)
Genome browser
AA seq
613 aa
AA seq
DB search
MSSSELTFRELGLSEELLRALNELGYEHPTPIQAASIVPLMEGKDILGQAQTGTGKTGAF
ALPLLNAIDHKLTAPQILVLAPTRELAVQVAEAFTSYAKYLKGFHVLPIYGGQSMHQQLQ
ALRRGPQVVVGTPGRVMDHMRRGTLKLDTIKALVLDEADEMLKMGFIDDIEWILDQTPDD
RQLALFSATMPEQIKRVANKHLASPINISIASSHATVDSIEQRFIQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLDARGYACSPLHGDMNQQARERAVDQLKNGKLDILI
ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRSGMAILFVTNREMRMLRMI
EKATNSRISPMKVPSPETVAERRLSRLGDQVAEVINGQQLDFMKGAVAQLCQQLEVDTDI
LAAALLYQVQQERPLQLPAMQERQRDVQDSKFQSGDDRSNRRRSSNRATPTDLGSADTLK
DNPDIKMCRYMLEVGRDHGVGVGNIVGAIANEANIDSRYIGQIQLFDQITTIDLPAGMPK
DILLHLKKVRVCGRPINIKEVGTQMDTGSKPRRSRKHDDEGHGYSERERSPRTERSKPRV
EGERRPKRRERKE
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagtgaactgactttccgtgaactcgggctttccgaggagttgctgcgcgcc
ctgaacgaattgggctacgagcatccaacccctatccaggccgccagtatcgtacctcta
atggagggtaaagatattctgggccaggctcagactggtaccggtaaaaccggtgctttt
gctttaccgttactcaacgccattgatcataaattaaccgccccgcagattttggtattg
gcgccaacccgggaactggccgtacaggtcgcagaagctttcaccagttatgccaaatac
cttaagggctttcatgtactgcctatctatggtgggcaaagcatgcaccaacagttacag
gcgctgcgtcgcggccctcaggtagtggttggtacaccaggtcgggtcatggatcacatg
cgccgcggcacactcaaactcgataccatcaaagcgttggtactggatgaagcggatgaa
atgctgaaaatgggtttcatcgatgatatcgaatggatccttgatcagactccagatgac
cgccaactggcgctgttttctgccaccatgcctgagcagatcaaacgtgttgctaacaag
catctggccagtccaatcaacatcagtattgcctctagccatgcgaccgttgactcaatt
gaacagcgttttattcaggtgtcacagcacaacaaactggaagccttggtgcgagtgctg
gaagtggaaaacaccgaaggtattatcatcttcgtgcgtacccgtaactcttgtgttgag
ttggctgaaaaactcgatgcccgcggttatgcctgttcaccgctgcatggtgatatgaac
cagcaagcacgtgaacgcgccgttgaccagttgaaaaatggcaaactggatattttgatc
gccactgacgtagcggcacgtggtctggacgtagaacgtatcggtcatgtgatcaactac
gatatcccttacgataccgaagcttacgtacaccgcattggtcgtactggccgtgctggc
cgcagtggtatggcgatcctgtttgtgactaatcgtgaaatgcgcatgctgcggatgatc
gaaaaggccactaacagccgtatctcaccgatgaaagtcccaagcccagaaaccgtagcg
gaacgtcgtttgtcccgtcttggcgatcaggtggctgaagtcatcaatggtcaacagctc
gactttatgaaaggcgcggtagcacagctatgccagcaactggaagtcgataccgatatc
ctagccgcggctttgttgtatcaggtacagcaagaacgtccactgcaactgccggccatg
caggagcggcagcgtgatgtgcaagacagcaagttccagagcggtgatgaccgtagcaac
cgtcgtcgcagcagcaatcgcgccacgccaaccgatcttggcagcgctgacacgctaaaa
gacaatccagacatcaagatgtgccgttacatgctggaagtaggccgcgatcatggggtt
ggtgtaggtaacatcgttggtgctattgccaacgaagccaatatcgacagccgttacatc
ggccagatccaactgtttgatcagatcaccaccatagatctgccagccggtatgccaaaa
gatatcctgctgcacctgaaaaaagtgcgcgtttgtggccgcccgatcaatatcaaagaa
gtcggcacccaaatggatactggcagcaaaccccgtcgcagccgtaagcacgacgacgaa
ggacacggctattctgagcgcgaacgcagcccacgcactgaacgtagcaaacctcgtgtt
gaaggcgaacgtcgtcctaaacgccgtgagcgcaaagagtaa
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