Shewanella dokdonensis: KHX94_11625
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Entry
KHX94_11625 CDS
T07469
Symbol
ssb
Name
(GenBank) single-stranded DNA-binding protein
KO
K03111
single-strand DNA-binding protein
Organism
sdk
Shewanella dokdonensis
Pathway
sdk03030
DNA replication
sdk03430
Mismatch repair
sdk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KHX94_11625 (ssb)
03430 Mismatch repair
KHX94_11625 (ssb)
03440 Homologous recombination
KHX94_11625 (ssb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdk03032
]
KHX94_11625 (ssb)
03400 DNA repair and recombination proteins [BR:
sdk03400
]
KHX94_11625 (ssb)
03029 Mitochondrial biogenesis [BR:
sdk03029
]
KHX94_11625 (ssb)
DNA replication proteins [BR:
sdk03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
KHX94_11625 (ssb)
DNA repair and recombination proteins [BR:
sdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Other MMR factors
KHX94_11625 (ssb)
TLS (translesion DNA synthesis) factors
Other SOS response factors
KHX94_11625 (ssb)
Mitochondrial biogenesis [BR:
sdk03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Other Mitochondrial DNA replication factors
KHX94_11625 (ssb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SSB
SSB_1
Pyridox_ox_2
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QVK22104
LinkDB
All DBs
Position
2426398..2427063
Genome browser
AA seq
221 aa
AA seq
DB search
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSDTWKDQQGQQQERTEWHRVVIF
GKLAEVAGEYLRKGSQVYLEGRLQTRKWKDQGGQDRYTTEVVIDMQGSMQMLGGRQQNQG
GAPAQGGNMGGGYTAPQGGNQYAAPQQSQPQYAAPQPSAPQYNAPQQAAPAYQQPQQNSG
YAPKPQSQQRPAPQPQQQPQQQPQQNYTPDLDDGWDDDIPF
NT seq
666 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcgtggtgttaacaaggtaattctggtaggcaatctggggcaggaccccgaa
gtgcgctatatgccaaacggcaatgctgtagcaaatatcaccgtggcgaccagtgatacc
tggaaggatcagcagggacagcaacaggaacgtaccgagtggcatcgtgtggtcatcttc
ggcaagctggctgaagtggccggggaatatctgcgtaaaggttcgcaagtatatctggaa
ggtcgcctgcaaacccgtaagtggaaggatcaaggtggtcaggatcgctacactaccgag
gtggttatcgatatgcagggtagcatgcagatgctgggtggtcgtcagcagaatcaaggt
ggcgcaccagcgcagggcggtaatatgggcggtggttatactgcgcctcagggcggtaat
cagtatgctgctccacagcaatcccagccacagtacgcggcaccacagccgtcagcaccg
cagtacaatgctccgcaacaggcggctccggcttatcaacagccacagcagaacagtggt
tatgcgcctaaaccgcaatcgcagcagcgccctgcaccacaacctcagcagcaaccacaa
cagcagccacagcagaattacacaccagatctggatgatggctgggatgatgatatcccg
ttctag
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