Shewanella dokdonensis: KHX94_13835
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Entry
KHX94_13835 CDS
T07469
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
sdk
Shewanella dokdonensis
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdk03009
]
KHX94_13835 (srmB)
Enzymes [BR:
sdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KHX94_13835 (srmB)
Ribosome biogenesis [BR:
sdk03009
]
Prokaryotic type
rRNA helicases
KHX94_13835 (srmB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QVK22436
LinkDB
All DBs
Position
complement(2892817..2894046)
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AA seq
409 aa
AA seq
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MQFEEFELEPELLASLKNMGHNTPTTIQQLTIPLAMEQRDLLAHAPTGTGKTASYLLPAL
QHLLDFPRRHPGQARVLVLTPTRELASQVHRYASHLATHVELTMGIVTGGVPYGPQEQAL
RGNIDLMVATPGRLLDYMDKGLFSATEVEILVIDEADRMLDMGFAQVVKSIVIEAQKRKQ
TLLFSATLEGNGVRSFANELLEDPVFVEAEPPRSEKAKIHQWVHLADDKEHKFALLCHIL
KQEDVSRAIVFAKTREIVASLEGQLLQAGIPTAFMRGDMEQKKRFQALGRFTKGEVKVLL
ATDVAARGIDVDDITHVINFDMPRTADIYVHRIGRTGRAGKKGTAISLVEAHDMLVLSKI
ERYTEQKLKRRVIEALRPKHKEARVPVKKKVNKANTKKLNKNKAKISKS
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaagagttcgaactggagccagaactgctggcatccttgaaaaacatgggg
cataacaccccgacaacgattcagcaactgaccattccgttggcaatggagcagcgtgat
ctattagcccatgcccctacaggtacgggtaagaccgccagctacttgttgccagcgtta
caacatctgctggactttccaagacggcatccaggtcaagcgcgggtattggtattgaca
ccaacgcgggaactcgccagtcaggtgcaccgttatgccagccatctggcaacccatgtt
gagctcacaatgggcatagtgaccggaggcgttccctacgggccacaggaacaggctttg
cgcggtaatatcgatctgatggtcgctacccctggccgcttgctggattacatggataaa
gggctattcagcgccaccgaagtcgaaatactggtgattgatgaagccgaccgcatgctc
gatatgggctttgctcaagtggtgaaatccattgtgattgaagcgcaaaaacgtaagcaa
acgttactgttttctgccaccttggaaggaaatggtgtccgcagttttgctaacgaattg
ctggaagatcccgtttttgtcgaagccgaaccgccgcgcagtgaaaaagctaagattcat
cagtgggtgcacttggccgatgacaaagagcataaatttgcgctgctgtgccatattctc
aaacaggaagacgtaagccgcgccattgtctttgccaaaacccgcgaaatagtggcaagt
cttgaaggccaactgctacaggctggtattcccaccgcctttatgcgcggcgatatggaa
cagaaaaaacgctttcaagcgctgggacgttttaccaaaggtgaagtcaaggtattgctt
gccaccgatgttgccgcccgcggcattgatgtggacgatatcacccatgtaatcaatttt
gatatgccgcgtaccgccgatatttacgtgcaccgcattggtcgtactggccgcgcgggc
aagaaaggcacggcaatatcactggtcgaagcccacgatatgttagtgctgagtaaaatc
gagcgctataccgagcagaaactgaaacgtcgcgtcattgaagcgctgcgccccaagcat
aaagaagcgcgagtgccagtgaaaaagaaagtgaacaaggctaatacaaaaaaactaaat
aaaaacaaagcaaaaattagcaagtcttaa
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