Shewanella dokdonensis: KHX94_13860
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Entry
KHX94_13860 CDS
T07469
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sdk
Shewanella dokdonensis
Pathway
sdk03410
Base excision repair
sdk03430
Mismatch repair
sdk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KHX94_13860 (recJ)
03430 Mismatch repair
KHX94_13860 (recJ)
03440 Homologous recombination
KHX94_13860 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdk03400
]
KHX94_13860 (recJ)
DNA repair and recombination proteins [BR:
sdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KHX94_13860 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KHX94_13860 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KHX94_13860 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QVK22440
LinkDB
All DBs
Position
2898475..2900205
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AA seq
576 aa
AA seq
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MNQKIVRRPHVDDSHLPAYLPPLLKQIYASRGLCSEDCELLLSRLLRPETMLGLTHAAQL
LADALIQQQRIVIVGDFDADGATSTSVCLLALRAMGARHCDFLIPNRFDYGYGLSPEIVA
VAAAQAAEVLVTVDNGISSIEGVAAAKAAGMTVIITDHHLPGQQLPVADAIVNPNQPGCQ
FASKSIAGVGVAFYLMTALRAELRGRGYFASHGIEMPNLGQLLDLVALGTVADVVALDTN
NRIMVEAGIKRVRSGQCRPGITALLEVARREPQRLVAADFGFAVGPRLNAAGRLDDMALG
VATLLCDELYQARRMAAELDGLNSERRELEAGMQQEALKFLRAMDFAEQQLPWGIALYQP
DWHQGVIGILASRIKDRYHRPVIAFAEASDSEIKGSARSISGLHMRDLLELINSRHPGMI
IKFGGHAMAAGLTLAKAAFSDFARAFDDTVRELLAEEDLQGQLWSDGELATEYFTLDTAQ
LLRDAGPWGQAFPEPSFDGTFRILQQRLVGEKHLKLVLETECGTVMADAIAFNVDLNIWP
DASIERVRLLYKLDVNEFRGNSSLQLLVEQLEPLKS
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
ttgaaccagaaaattgtgcgccgtccccatgtggatgacagtcatttacccgcctatttg
ccgccacttttgaaacagatttacgcgagtcgcggtctttgttccgaggattgcgaactg
ctgctgtctcggctgttacggccagagaccatgctgggattaacccatgcggcgcaactg
ttggctgatgccctgatacaacaacagcggattgtgattgtgggggattttgatgctgat
ggtgccacgtccaccagtgtctgcctgttggcattaagggcgatgggggctcgccactgt
gattttctgatccccaaccggtttgattatggttatggactcagccccgagatagttgcc
gttgctgcggcgcaagcggctgaagtgctggtcaccgtagataacggtatctcctctatt
gaaggtgtcgctgcggctaaagcggcgggtatgacggtgatcattactgaccatcatctg
ccggggcagcaactgccggtcgccgatgccatcgttaatcccaatcagccggggtgccaa
tttgcgtcgaaatccatcgcgggcgttggcgtcgcattttatctgatgacagcgttacgg
gctgaattacgtggccgggggtattttgccagccacggcatagagatgcctaaccttggg
caattgctggatttagtggccttgggcacggtagctgatgtggtcgctttggataccaac
aaccggattatggtagaagcagggattaaacgggtacggagcgggcagtgtcgtccgggg
attaccgccctgctggaagtggcccggcgcgaaccgcaacggctggttgcggcagatttt
ggttttgccgtggggccacggcttaatgccgcaggtcgactggatgatatggccttaggt
gtggccactttactgtgtgatgagctttaccaagcccggcggatggcggcagaactggat
ggtctgaacagtgagcgccgtgagctggaagccggaatgcagcaagaggcgttgaagttc
cttcgcgcgatggattttgctgagcagcaactgccgtggggcatcgctttatatcagcca
gattggcatcagggcgtaattggtattctggcatcgcgtatcaaagatcgttaccaccgt
ccggtgattgcctttgctgaagcctctgacagcgagatcaaaggttcagcgcgttccatc
agcgggttacacatgcgtgacttgctggaactgatcaacagccgtcatccggggatgatc
atcaaatttggcggacacgctatggcggccgggctcactttagccaaagcagcattcagc
gactttgcgcgggcttttgacgacacggtacgcgagctgttagcggaagaagacctgcaa
gggcaactgtggtcagacggtgaactggcaaccgaatatttcaccttggataccgcccag
ctattgcgtgatgctgggccttggggccaagcgtttcccgaaccaagttttgatggcaca
tttcgaatactgcaacagcgactggtgggtgagaaacatctgaaattagtcttagaaacc
gagtgcggcacagtgatggcggatgcgattgctttcaatgttgatttaaacatctggcca
gatgctagcattgagcgcgttagattgttgtacaagctggacgtcaatgaatttcgcggc
aacagcagcttgcaattgttagtggagcaattggaaccgcttaaaagttaa
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