Shewanella dokdonensis: KHX94_14575
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Entry
KHX94_14575 CDS
T07469
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sdk
Shewanella dokdonensis
Pathway
sdk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KHX94_14575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdk03019
]
KHX94_14575
Enzymes [BR:
sdk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KHX94_14575
Messenger RNA biogenesis [BR:
sdk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KHX94_14575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
AAA_22
SPOR
DUF594
Gag_p24
Motif
Other DBs
NCBI-ProteinID:
QVK22539
LinkDB
All DBs
Position
complement(3037120..3038415)
Genome browser
AA seq
431 aa
AA seq
DB search
MKFESYSFAPEIIRAVSECGYEEMTPIQKLAIPPIRRGQDVLASAQTGTGKTAAFVLPLL
QRIFDKPCELPASVIRVLILAPTRELVAQVADNAKAYSRYLDTRVVSLFGGVKTAGQANK
LKAGVELVVATPGRLLEHLQAGNVNLSQVEVLVLDEADRMLDMGFIKDIQKILQATNKER
QTLMFSATFSGGVRQLAEQILRRPKVLAADRQNTTASTVSQVVYPVEQRRKRELLAELIG
RKNWHQVLVFSATREDADQLADELNQDGIPTAAVHSEKAHGKRRRSLKEFTEGKIRVLVS
TEVAARGLDIPDLDYVVNYDMPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERILADIE
KLIGQRLKRIMMPGYEVSNRDVLLKQLQRRRFGKHKPDASSASEQVAAEKSMSGRRVKVK
VGGNQQHKKLK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaatcttacagttttgctcccgagatcattcgcgccgtcagcgaatgcggt
tatgaggagatgaccccgattcaaaaactggcaataccgccgatccgtcgcggtcaagat
gtgttagccagtgcccagaccggcaccgggaaaaccgccgcgttcgtgttaccgctgcta
cagcgcatattcgataaaccctgtgaattacccgccagcgtcatccgcgtcttgatcctc
gccccgacccgtgaactggtggcgcaagtcgccgacaatgccaaggcgtacagccgttac
cttgatacccgtgtggtgtcgctgtttggtggggtaaagaccgctggccaagccaataaa
ttaaaagcgggcgtggaactggtggtggcaacgccaggacggctactggaacatctgcaa
gcaggtaacgtcaatctatcgcaggttgaagtgctggtactggatgaagccgatcgcatg
ctagatatgggttttatcaaagatatccagaagatcctgcaagccaccaacaaagaacgg
caaacactgatgttttctgccaccttttctggtggggttaggcagcttgccgaacagatc
ttgcgacgaccgaaagtgcttgccgccgatcgccagaacaccaccgcatctaccgtcagc
caagtggtctacccggtagaacagcgacgaaaacgggaattactggccgaactcattggc
cgtaaaaactggcaccaggtgctggtcttctctgctacccgtgaagacgccgatcaactg
gccgatgaactgaatcaagacggcatcccaacggcggctgtacacagtgaaaaagctcac
ggcaaacgccgccgctcactcaaagagttcactgaaggtaaaattcgggtactggtatcg
acagaagtcgccgcccgtggtctggatatccctgacctcgattacgtagtgaattatgac
atgccgtttctggcggaagattatgtacaccgcataggtcgtaccgggcgagcaggcaaa
actggcgtagcgatttctttcgtcagccgtgaagaggaacggatcctggccgatatcgaa
aaactcattggtcaacgcctgaaacgcatcatgatgccgggttatgaagtgagcaaccgc
gatgtattgctcaaacagttgcaacgtcgccgctttggtaaacataaaccagacgccagc
agtgccagtgaacaagtggcggcagaaaaatcgatgtcaggacgccgcgtaaaggtcaaa
gtgggcggcaaccagcaacacaaaaaactcaagtaa
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