Shewanella dokdonensis: KHX94_14620
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Entry
KHX94_14620 CDS
T07469
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
sdk
Shewanella dokdonensis
Pathway
sdk03030
DNA replication
sdk03430
Mismatch repair
sdk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KHX94_14620 (holA)
03430 Mismatch repair
KHX94_14620 (holA)
03440 Homologous recombination
KHX94_14620 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdk03032
]
KHX94_14620 (holA)
03400 DNA repair and recombination proteins [BR:
sdk03400
]
KHX94_14620 (holA)
Enzymes [BR:
sdk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KHX94_14620 (holA)
DNA replication proteins [BR:
sdk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KHX94_14620 (holA)
DNA repair and recombination proteins [BR:
sdk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KHX94_14620 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
DUF4388
DUF6063
Motif
Other DBs
NCBI-ProteinID:
QVK22545
LinkDB
All DBs
Position
complement(3046250..3047281)
Genome browser
AA seq
343 aa
AA seq
DB search
MRVYPDQFARQITVLKPCYLLFGDDPWLLDTTKSQLLAAARAQGFEERVQLEQENSFNWQ
DLYNEWHAMSLFASRRIIELQLPQAKPGSDGSAMLQALLAQPNPDTVLLLTGPKLAQEQQ
HSKWFKLLDSKGIFVPCTTPEGPQFQRWLDSQIQHYQLQLQADARAMLANLYEGNLLAAD
QALQLLQLLAGQRQVNAAELSHYFEDQSRFSVFQLTDALLANQQDKAQHMLVQLKAEDTA
LPIVHWALQKELTQLWQLQSALSAGHNLNQLFGQYRIWDKRKPLYQQALKRLSLAAIENM
LGVSSQLELALKQQGREDWIGISHLCLMFDAEAHRQLQQFELS
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtgtatccggatcagtttgcccggcaaataacagtgcttaagccctgttatctg
ctatttggcgacgatccttggctactggataccactaaatcacaactgttggcagcagct
cgtgcgcaagggtttgaagagcgcgttcaactcgagcaggaaaacagcttcaactggcag
gatctctacaatgagtggcatgccatgagtctgtttgccagccgccggatcattgagtta
caactgccgcaggctaaaccaggaagcgatggcagtgccatgctgcaagcgctattggca
cagcctaatcccgatactgtgttgctactcactggccccaaattggcacaagaacaacag
catagcaaatggtttaaactgctggatagtaaaggcattttcgttccctgcaccacaccg
gaagggccgcagtttcagcgctggttagatagccaaatccaacactaccaattgcagcta
caagccgatgcgcgggcgatgctcgccaatctgtatgaaggcaaccttttggcagcagac
caggcactgcaactgctacaactactggcgggacagcgtcaggtcaacgcagcggagcta
tcacactatttcgaagatcaatcacgcttcagtgtgtttcagctcaccgatgccttgctc
gccaaccaacaggacaaagcccagcacatgctggtgcaactgaaagcagaagataccgcg
ctgccaatcgtccactgggcgctacaaaaagagctgacacaattatggcagctacagtca
gcactttcggctggacataaccttaatcaactgtttggacaataccggatctgggataag
cgtaaacccctttatcaacaggcactaaaacgcttatcactggccgcgatagaaaatatg
cttggcgtcagttctcagctggaactggcacttaaacaacaagggcgtgaggactggatc
ggcatcagccacctgtgtctgatgtttgatgctgaggctcatcggcagttacagcaattt
gagttaagctga
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