Shewanella dokdonensis: KHX94_15760
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Entry
KHX94_15760 CDS
T07469
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
sdk
Shewanella dokdonensis
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdk03016
]
KHX94_15760
Enzymes [BR:
sdk01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
KHX94_15760
Transfer RNA biogenesis [BR:
sdk03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
KHX94_15760
Prokaryotic type
KHX94_15760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Tn7_TnsC_Int
Motif
Other DBs
NCBI-ProteinID:
QVK22700
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All DBs
Position
3275032..3276096
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AA seq
354 aa
AA seq
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MVALHYLYGKPVSRGNLRTVNEDFLVQELLPFVATGEGEHHLLHIRKRGLNTAFVAESLA
KFAGVHPKEVTFAGQKDKNAVTEQWFGVRIPGKETPDWQQLNSDNLQILSSQRHSKKLRI
GALTGNRFTLILRDVTDIDDVQQRLQQIREHGVPNYFGEQRFGHHGGNIDKAREMLAGKK
VKDRNKRSLYLSALRSLLFNTVVAARLQQYPETLLPGDCVMLAGSNSFFVAEQWDEVLKN
RLAAQDIQLSAPLWGRGRALATSDALAFESSVLADYAADLDALEHAGLSQERRPLMLCPQ
AMSWAVIPEGLRVSFVLPAGAYATSVLREVLDYTDVAEARWQRAVAEKEAQQDR
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
gtggtagctctgcattatctttatggaaaacccgttagccgcggtaacttgcgtaccgtt
aacgaagattttctggtacaggaattattgccctttgtagcaaccggagaaggggaacat
cacttactgcatatccgtaagcgtggcctgaatactgcttttgtcgcggaatcactggca
aaatttgccggtgtacatccgaaagaagtaacttttgccggacaaaaagacaaaaatgcg
gtgaccgagcagtggtttggcgtacgcattcccgggaaagaaaccccggattggcaacag
ttgaacagtgacaacctacagatactcagcagccagcggcatagcaaaaaattgcgaata
ggcgcactcaccggtaatcgctttacgctcattctgcgagatgttactgatatcgacgat
gtgcaacagcgtttacagcagatccgtgagcatggtgttcctaactattttggtgagcag
cggtttggtcatcatggcggtaatatagataaagcgcgggagatgttggctggtaaaaag
gtcaaggatcgtaataagcgttctctatatctttcagcattgcgttccctgttgtttaac
actgtggtcgctgccagattgcagcaatatcctgaaacgctgttgcccggtgattgtgtg
atgctggcaggcagcaacagcttttttgtggctgagcagtgggacgaggtgcttaaaaac
cgcttggccgcacaggatattcagttgtcggcgccattgtggggccgcggtcgagcgctg
gctacctctgatgcgctagcgtttgagtctagcgtgctggcagattatgcggcagatctc
gatgctctggaacatgccggattgtcgcaggaacgacggccattaatgttgtgtccgcag
gcaatgagttgggcggttattcctgaaggtttacgggtgagttttgtgttgcccgcaggt
gcctacgcaacctcagtgctcagagaagttctggattataccgacgtagccgaagctcgt
tggcaacgggctgtcgccgaaaaagaagcacaacaggacaggtaa
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