Shewanella dokdonensis: KHX94_16105
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Entry
KHX94_16105 CDS
T07469
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
sdk
Shewanella dokdonensis
Pathway
sdk02020
Two-component system
sdk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KHX94_16105
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KHX94_16105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdk03021
]
KHX94_16105
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
sdk02035
]
KHX94_16105
Transcription machinery [BR:
sdk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KHX94_16105
Bacterial motility proteins [BR:
sdk02035
]
Flagellar system
Flagellar assembly proteins
Stator
KHX94_16105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
UPF0122
Motif
Other DBs
NCBI-ProteinID:
QVK22745
UniProt:
A0ABX8DEB2
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All DBs
Position
3341809..3342522
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AA seq
237 aa
AA seq
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MSALRDWQNAGEPLDAVPVPRENEALQRYAYLVRRVVAHMRTQIGVVADRDDLQQIGLMA
LLKAIRRYGRDQDDQFESYAFKYIRGAMLDEFRRLDWRSRQSRQEAHRFRDGVRQLRSQL
GREPKEPEICAALDISTKQLMEFHYLEQAEIVESFELLLEQQGPMASENRDIARLEQRRL
LAQAMRLLPARNKLLLQLYYTHELNMKEIALTLGLTESRVCQLHKQSLQLLTEKLTG
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcacttcgagattggcaaaacgctggagagccgttagatgcggtgccagtgcct
cgtgaaaacgaggccttgcagcgttatgcctatctggtgcggcgagtggtggcgcatatg
cgcacccaaatcggcgtggttgccgatcgggatgatttgcagcagataggcttgatggca
ttgctgaaagcgattcgccgttatggccgcgatcaggacgaccaatttgagtcctacgcc
ttcaaatatattcggggcgccatgctcgatgaattccggcggcttgactggcgttcgcgg
caatcgcggcaagaggcgcatcgtttccgggatggcgtaaggcaattacgcagccaactg
gggcgggaaccgaaagaacctgaaatatgtgcggcgttggatatctccaccaagcaactg
atggagtttcattatctggagcaggctgaaatcgtcgagagctttgagctgttgctggag
caacaaggcccgatggcgtcagaaaaccgggatatcgcgcggttagagcagcggcgactc
ttggcccaggcgatgcggttattaccggcacgcaataagttactactgcagttgtattac
acccatgaactgaacatgaaagagatagctttgactctgggactaacggaatcccgcgta
tgccagttgcataagcagtcattgcaattgttaacggaaaaattaacaggctag
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