Shewanella dokdonensis: KHX94_16680
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Entry
KHX94_16680 CDS
T07469
Symbol
hupB
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
sdk
Shewanella dokdonensis
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdk03032
]
KHX94_16680 (hupB)
03036 Chromosome and associated proteins [BR:
sdk03036
]
KHX94_16680 (hupB)
03400 DNA repair and recombination proteins [BR:
sdk03400
]
KHX94_16680 (hupB)
DNA replication proteins [BR:
sdk03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
KHX94_16680 (hupB)
Chromosome and associated proteins [BR:
sdk03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
KHX94_16680 (hupB)
DNA repair and recombination proteins [BR:
sdk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
KHX94_16680 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
VWA_3
Motif
Other DBs
NCBI-ProteinID:
QVK22816
LinkDB
All DBs
Position
3466031..3466303
Genome browser
AA seq
90 aa
AA seq
DB search
MNKSELIEKIASGADISKAAAGRALDSFIAAVTEGLKDGEKISLVGFGTFEVRERAERTG
RNPQTGKEIKIAAAKIPAFKAGKALKDAVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatctgaactaatcgagaaaatcgcttctggtgctgatatttccaaagccgct
gctggccgtgcactggattcctttatcgctgctgtgaccgaaggtctgaaagacggcgaa
aagatttctcttgttggtttcggtacttttgaagtacgtgagcgcgctgagcgtactggt
cgcaacccacagactgggaaagagatcaaaattgcagccgctaaaattcctgctttcaaa
gcaggcaaggctctgaaggacgcagtaaactaa
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