Shewanella dokdonensis: KHX94_16895
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Entry
KHX94_16895 CDS
T07469
Symbol
ung
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sdk
Shewanella dokdonensis
Pathway
sdk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KHX94_16895 (ung)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdk03400
]
KHX94_16895 (ung)
Enzymes [BR:
sdk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
KHX94_16895 (ung)
DNA repair and recombination proteins [BR:
sdk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KHX94_16895 (ung)
Prokaryotic type
KHX94_16895 (ung)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
QVK24921
LinkDB
All DBs
Position
complement(3513184..3513864)
Genome browser
AA seq
226 aa
AA seq
DB search
MTQMPTWADVLAPEKTQAYFINTLNFIDAERAHNKHIYPTKADTFNALRYTPLADVKVVI
LGQDPYHGPGQAHGLCFSVREGVAPPPSLQNIFQELCHTVPGFSYPAHGDLSAWAKQGVL
LLNTVLSVEEGKAHSHAHLGWEQFTDKVVEAVNNYQQGVAFLLWGRHAGEKAQHVNTRKH
LVLKAAHPSPLSANKGFFGCNHFNLANQYLQSQGKTPLIGNFEHVR
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaatgccaacttgggcggatgtattggcgcccgaaaagacccaagcctacttt
atcaacaccctcaatttcattgatgcagaacgcgcccacaacaagcacatctatcccacc
aaagccgacaccttcaatgccttgcgctatacgccactggccgatgtcaaagtggtgatt
ttagggcaagatccttatcacgggccaggacaagcacacggcttgtgtttctccgtccga
gaaggtgtcgcaccgccaccatcgctacagaatatctttcaggagttgtgtcataccgta
cccgggtttagttatccagcgcatggcgacctgagtgcctgggccaagcaaggagtgtta
ttgctaaacactgtgctcagcgtggaggaaggcaaggcgcattcccatgctcatctaggt
tgggagcaattcaccgataaagtggtcgaggcggtaaataactaccagcaaggcgtggcg
tttctgttatggggccgtcatgctggcgaaaaggcccaacacgtgaatacccgtaaacat
ctggtgcttaaagctgcccatccgtcaccactctcggccaacaagggctttttcggctgt
aaccatttcaatctggccaatcaatacctgcaatcccaagggaaaaccccattaattggc
aactttgagcatgtcaggtag
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