Shewanella dokdonensis: KHX94_17555
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Entry
KHX94_17555 CDS
T07469
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sdk
Shewanella dokdonensis
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdk03016
]
KHX94_17555 (rnd)
Enzymes [BR:
sdk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KHX94_17555 (rnd)
Transfer RNA biogenesis [BR:
sdk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KHX94_17555 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QVK22943
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All DBs
Position
3657954..3659063
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AA seq
369 aa
AA seq
DB search
MQDYLYVDSSATLAPVLQQYQQSELLVLDTEFVRTRTYYARLGLIQAYDGKTLALIDPVA
IDDLSGFWSLLTAPHITKLLHSCSEDLEVFAHDGGIQPAPLLDSQIAAGLAGQGHGLGYA
KLVQQYLGVELDKGESRTDWIRRPLTQSQLTYAANDVLYLYRLFPELKQTLQQQGRYQWA
MEESARMTEGRLLPPERELAYLKVKNAFQLSTMELAVLRGLAAWRLDKAIKKDLALGFVM
KDHALIALAKKQPRTVNDVLRLKDLTDQEKRFYAKDVVNIITNTDYARLPEPIDVLALKP
AYKAAFKLLKGCLEQIATSAQVPVEMLASKRHINEYLGWYWDNRQGQLPLLLQGWRGELA
AEKLQALSL
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagattatctgtacgttgacagcagcgccacattagcaccggtgctgcagcagtat
cagcagagtgagctgctggtactagatactgagttcgttcgcactcgcacctattacgca
cgtttgggcttgatccaagcctatgatggcaagacgttagcgttaatcgatccggtcgct
atcgatgacttgtcagggttctggtcactattaacggcaccgcatatcaccaagttgctg
cattcttgcagtgaagacttggaagtgtttgcccatgatggtggcatccagcctgcgccg
ctcctggacagccaaatagccgctgggctggcggggcaaggacatggtctgggatatgcc
aagttagtgcagcaatatttaggcgtagaactggataaaggcgagtcgagaaccgattgg
atccgacggcctttgacccagtcacagttgacttatgccgccaatgatgtgctttatctt
taccgactctttcctgaactgaaacaaacgctgcaacagcaagggcgctatcagtgggcg
atggaagaaagtgccagaatgaccgaagggcggttattgcccccagagcgagaactggct
tatctgaaagttaaaaatgcctttcagttgtcgacgatggaactggccgtgctgcgcgga
ttagcggcttggcggctggataaagccattaaaaaagatttagcgttaggttttgtgatg
aaagatcatgcgctgattgctttagctaaaaaacaaccgcgtaccgtgaatgatgtgctg
cgtctaaaagatctgaccgatcaggaaaagcgtttttatgccaaagacgtggttaacatc
attaccaataccgattatgcccgtttgcccgagccgatagatgtactggcgctcaaacca
gcatataaagcagcgtttaagctactaaagggctgtttggaacagattgccacatcagca
caagtgccagtagaaatgttagcttctaaacgccatatcaacgagtatctggggtggtat
tgggataatcgccaaggacaacttcccttgctgctgcaaggttggcgtggcgaactggcc
gcagaaaaactgcaagcactgagtttgtag
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