Shewanella dokdonensis: KHX94_19260
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Entry
KHX94_19260 CDS
T07469
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
sdk
Shewanella dokdonensis
Pathway
sdk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KHX94_19260 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdk03400
]
KHX94_19260 (recC)
Enzymes [BR:
sdk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KHX94_19260 (recC)
DNA repair and recombination proteins [BR:
sdk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KHX94_19260 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
QVK23179
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All DBs
Position
3983506..3986985
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AA seq
1159 aa
AA seq
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MFKLIQSNKMELLSAALADQLATPAAGQSPLTEEQILVQSPGMSTWLRLEIAKHNGIAAA
LNFPLPSSFVWDLCHQLLPEVPQENAFTKEAMTWKLLGLLPTLINEPVYAPLRRYLGDDS
KQLPLKQFQLAARIADIFDQYLVYRPDWIAAWESEQLPFALSEEQQWQPQLWRQLRQRNQ
QLGLSGYHRANLHQALVAILRDDQQHLPQLPTRLFVFGISSMPPQMLSVLQALGHRLQVT
VFSLSPCQHYWGDIVNPKTRARMNLAYAAKRQLPENWQDSLIVGNPLLANNGKLGRDLLD
LLLELPAEDIELGDDLFYPAGDANLLQGLQQDILQMETRGQLLGPDSTLYLSLTGRRLLR
TDDDSLSLRSCHSPLREVETLHDHLQWLLAREPQLSPKDVVVMMPDVAAYAPYIDAVFSH
RDGQYYIPYAIADRGASQESPLISSFLQLLDINNSRFALTEVLTLLELPATLKRFALDEA
DLAQIRQWLELAGVRWGRSGAARQQQQVPAFEQNSWAEGLKRLLLGYALEDDSELFGGHL
PVAGVEGQSAQALGKLLNFIEALDNTAKALSSEQPASVRIQQLSAFCLEFYTPENDSDTQ
ALMAIHQAIAKLASELSNAGFNDILEQQLLLQWFRSQLEESRVGQRYLAGAVNFCTLMPM
RSIPFQVVCLLGMNDGVYPRVQHPVGFDLMAQQAPRRGDRSRRLDDRYLFLEALLSARRQ
FYISYVGRSQRDNSPRNPSMLVAELLEYCQLTCLPETLASTKLSEPLDATALQQLESTLS
GMLLKQQPLQPFDAALYQAALLKHPASAALTPSFATQWCPQPQMAATTDFLNGTPLPLSA
ADADTTAEQIIELQALVRFFRNPAQYFFNRSLKLDLGLDLSADDNDEPFTLNALQRYQLQ
LLMLQDALKHDGISSVALTERLKASGQLPNKPFDELLLGRYQQDVAPLLDRTLYLRGEQQ
QTLTVDLPFPELNCRLHGRLDDISAKGLISCRPGAAKGRDIVRLYLRHLALNASGWQRYS
FLLDMGDFHALAPLPASAAKQRLQLWLQAFYHGQSQPLQFMPQTSLAYAASTGITHEDRL
EEAKSAWDDRQGKDGNTLPGEGSDPHYQRCFRFPDDFSEDSFGQQTLTLLTPLLNDYHQG
DLRDLAEFIANGGKEQSHD
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaactgatccaatccaataaaatggagttactgtcggccgcacttgccgatcag
ttagctacaccagccgctggtcagtcacctttaactgaagagcagatcctggttcagagc
ccgggcatgtcaacgtggttgcggctagagattgccaaacacaacggcattgcggcggcg
ctgaattttccgctgccttccagtttcgtttgggatctgtgccaccaattgctgccagag
gtaccgcaagaaaacgccttcactaaagaagccatgacctggaagctgctgggactcctg
cccacgcttatcaatgagccggtatacgcaccgctacggcgttacttgggtgatgacagc
aaacagttacccttaaagcagtttcaattagccgcgcgcattgccgatatttttgaccag
tatctggtatatcgccctgactggattgctgcctgggagtcagagcaactgccgtttgct
ttgagtgaagagcaacaatggcaaccacagttgtggcgacaactgcgccagcgcaatcaa
cagttgggactcagtggctaccacagagcgaacctgcatcaagcattagtcgccatcttg
cgtgatgaccaacaacacttgccgcaattacctacccggctgtttgtcttcggtatttct
tcgatgccgccacaaatgttgtcggtattacaagcgctcggacatcgtttgcaagtgaca
gtattcagcctcagtccttgtcagcactactggggcgatatcgtcaaccctaagacccgc
gcccgaatgaatctggcttatgcggccaaacgccagctcccggaaaactggcaagacagc
ctgatcgtcggcaatccgctcttagcaaataacggcaagctggggcgcgatctattggat
ctactgctagagttgcctgcggaagatattgaacttggggacgatctgttttatcccgct
ggcgacgccaacctgctacaagggttacaacaggatattttgcagatggaaactcgcggc
cagttgcttggccccgatagcacactctacttatcactgacggggcgtcggctacttcgc
accgatgacgattccctcagcttgcgcagctgtcattcaccgctgcgcgaagtcgaaaca
ttacatgatcatctgcaatggctgttagcgcgtgagccacagttatctcccaaagatgtc
gtggtcatgatgccggatgtggccgcttatgcgccttatattgatgcggtattttctcac
cgtgacggccagtattacatcccttacgcgattgccgatcgtggtgccagtcaggaatcg
ccgttaatcagcagctttctgcaactactggatatcaacaacagccgctttgcactcacg
gaagtactgacactcctggagctacccgccacgttgaagcgcttcgcgttggatgaagcc
gacctggcccagatccgtcaatggttagaactggcgggggtacgctggggacgcagcggt
gccgcaaggcagcagcaacaagtgcccgcctttgaacaaaattcttgggccgaagggtta
aagcgtctgctcctaggctatgccttggaagatgacagcgaattgtttggcggccacctg
ccagttgccggcgttgagggccaatcagcacaagcacttggaaaactgttgaattttatt
gaggcactggataacacagctaaagcgctgtccagcgaacagccagccagcgttagaatc
cagcaactatcagcattttgtttagaattttacaccccagaaaacgacagtgatacgcaa
gcattaatggcaattcaccaagcaattgccaaacttgcatcagaattatcgaacgcagga
ttcaacgacatactggagcaacaactgctgttacagtggttccgttcacaactggaagaa
tcccgtgtcggccagcgttatttggcaggcgctgtcaatttctgcactctgatgccgatg
cgctctattccattccaagtggtgtgcctactggggatgaacgatggcgtttatccacgg
gtacaacacccggtgggctttgacttgatggctcagcaagcaccgcggcgtggcgatcgt
tcgcggcggctggatgaccgttatctgtttctggaagctttgctttcagccaggcgacag
ttttacatcagctatgttggccgctcgcagcgcgacaacagcccccgcaacccatccatg
ctggtggcggaactcctagaatattgccagctgacttgtctgccagaaacgctcgccagc
acaaaactcagtgagcccttggatgccacagccttgcagcaactggaaagcacgctatcg
ggtatgctgctcaaacagcaaccactgcaaccttttgatgcggcgctgtaccaagccgcg
ttgctaaagcatcctgccagcgcagcccttaccccctcctttgccacacaatggtgtccg
cagccacaaatggcagcgaccacggatttccttaacgggacacctttgcctttgtcagcg
gcggatgcagataccaccgccgaacagatcatcgaactgcaagccttagtgcgttttttc
cgtaatccggcgcagtattttttcaaccgcagtctcaagctggatctcggtctggatctt
agcgctgacgataatgatgaaccgtttacactcaatgcgttgcaacgttaccaactgcaa
ctgctgatgctgcaagatgccctcaagcatgacggcatcagctccgtagcgctcactgaa
cgactcaaagccagtgggcaattacccaataaaccctttgatgagctgctccttggacgc
tatcaacaggatgtggcgccgttactggatcgcaccttgtacttgcgcggtgagcagcag
caaacgctgacagtggatttgcccttccctgaacttaattgccgtctgcatggacgttta
gatgatatcagtgctaaaggcttgatcagttgccgtcccggcgcagctaaaggccgagat
atcgtgcggctgtatctcaggcatctggcgctcaatgccagtggctggcagcgctatagc
ttcttgctggatatgggcgacttccatgcgctagcgccgttacccgccagcgcagccaaa
cagcggttacaactgtggctacaggcgttttatcacggccaatcgcagcctttgcagttc
atgccacaaacatcgctggcctatgctgcgagcacgggcatcacccatgaagatcggctg
gaagaggccaaaagtgcctgggatgatcgccaaggaaaagatggcaatacactgcccggc
gaaggcagcgatccgcattatcaacgttgcttccgttttcctgatgattttagtgaagac
agtttcggccaacagactctaacgctgttaacgccgttactgaatgactatcaccaggga
gatctgcgtgatttagccgaatttattgccaatggcggtaaggagcaaagccatgactga
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