Sulfurospirillum deleyianum: Sdel_1613
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Entry
Sdel_1613 CDS
T01126
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sdl
Sulfurospirillum deleyianum
Pathway
sdl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sdel_1613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdl03400
]
Sdel_1613
Enzymes [BR:
sdl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sdel_1613
DNA repair and recombination proteins [BR:
sdl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sdel_1613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACZ12629
UniProt:
D1B3F9
LinkDB
All DBs
Position
complement(1628104..1631073)
Genome browser
AA seq
989 aa
AA seq
DB search
MLQAAFYEFLQTKNECELLGVKGDKEAFLASEVALYCGKKSYVLPDLRANYGDDLLSFHE
EMVELLRVLYAFYHDASSKKILISPLRTLLTPLPKVELFSTLTLAFGMRLHLERFREQMF
YWGYLAVDVVQGKGEISIRGDIIDIFPPNSDYALRISLFDDEVESIRFFECESQKSLKDE
LEEWLLFPALFALDESRYALMQRRIETLKSDSFTKDIHSLGLWVLGESGDVYTERFKTYL
SMDAVDECNEIALFDEEGVKKLRLLPSLSTPKAYREIAPSNIKTFIELHQKKKITLLAKN
EVLLRMVDLDALHVKWIQSERIVNIMSADEVILSLNKPLSKQKRKRVRIVLDELKNGDYV
VHENYGIGIFKGLTQVSVLGATKDFVLIEYLGDDKLLLPVENLHVIDRYIGESGGLVSVD
RLGKGSFQKLKAKTKERLLEIASEIIAIAAKREMVEGLNIAIENEELQAFQADAGFMYTE
DQKRVIDEILVDFKSGKMMDRLLSGDVGFGKTEVAMNAIFATVQKGFQALLIAPTTLLCA
QHFKSLSHRFAKYNIKVAQLDRFTTAAQKQLILKELKSGALQVCVGTHSLFDVELFNPAL
VVVDEEHKFGVKQKEKLKNFRENVHILSMSATPIPRSLNMALSSIKQYSQLLTPPSDRED
VRTFVKEYDEKVIKEAILREMRRGGQIFFVHNRIATIEAKRKELLSMMPNLRILTLHSEI
SASVTEKEMLRFEEKAYDLLLSTSIIESGIHIPNVNTIMIDAADHFGMADLHQLRGRVGR
SKRQGFCYFLVKEKESLSESAKKRLIALESNSYLGSGSILAYHDLEIRGGGNLVGEAQSG
HLKNIGYALYLRMLEDAINALMGKTPVASREVDMKLSISAFISDSYIAEDRVRLELYRRL
SRCGSIHEVLEIEEEMLDRFGKMDVPTKQFLQLIEIKILATQHHIVLVSNYGQMITLKYE
DEKKQTLQSRSRDDDDVIDTVLHYLRNPS
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagcagcgttttatgaatttttacaaacaaaaaatgagtgtgaacttttaggg
gttaagggtgataaagaggcatttcttgcttctgaagttgctttgtattgtggtaaaaaa
agttatgttttacctgatttaagagctaattatggggatgatttgctctcctttcatgag
gaaatggtggagcttttacgtgtactgtatgctttttaccacgatgcttcttctaaaaaa
attctcatttctccacttcgaaccctcttaacgcctcttcctaaagtagaactcttttca
accttaaccttagcgtttggaatgcgtttgcatctggagcgttttcgtgaacagatgttt
tattggggttacttagccgttgatgtcgtacaaggtaagggtgaaatttcaatacgaggc
gatattattgatatttttccgcctaacagtgattatgctctacgtattagcttgtttgat
gatgaggtagaaagtattcgttttttcgagtgcgagagtcaaaaaagtcttaaagatgag
ttagaagagtggcttctttttcctgcgctttttgccttagatgagagtcgttatgcgttg
atgcaaagacgcattgaaacgctgaaaagcgatagctttaccaaagacattcactcactg
ggcttatgggttttaggggagagtggagacgtttatacagagcgttttaaaacgtatttg
agtatggatgcagtcgacgagtgtaatgaaatagctctttttgatgaagaaggggtgaaa
aaactgcgtttacttccttctctttctactccaaaagcgtaccgtgaaattgcgcctagt
aacattaaaacctttatagagctgcaccagaaaaagaagataacccttttagcaaagaat
gaagttttactgcgtatggtggatctggatgctttacatgtaaaatggattcagagtgaa
cgcattgtgaatatcatgagtgcggatgaggtgattctctctttaaataagcctcttagc
aagcaaaaacgcaaacgtgtgcgcattgttcttgatgagctgaaaaatggcgattatgtt
gtacatgaaaattatgggattggtatttttaaggggttaacacaggtcagtgttttaggg
gcgacaaaagattttgtgttgatagaatatttgggtgatgacaaacttcttttgcctgtg
gaaaatttacatgtcatagatcgatacatcggtgaaagcggtggattggttagtgttgat
cgccttggtaagggaagttttcaaaaacttaaagctaaaaccaaagagcgtcttttagaa
attgccagtgagattattgcgattgcggcaaagcgtgagatggttgaaggcttaaacatc
gccattgaaaacgaagaacttcaagcgtttcaagcggatgcgggatttatgtataccgaa
gatcaaaagcgtgtgattgatgagattttggtggattttaaaagcggtaaaatgatggac
aggctcttaagtggtgatgtcggttttggtaaaacggaggtggcgatgaatgccattttt
gcgacagttcaaaaaggatttcaagcattgctaattgcgcctacaacccttttgtgtgcg
caacatttcaaaagtctctcccatcgttttgcaaaatataatattaaagtagcgcaatta
gaccgctttaccaccgcagcacaaaaacagctcattttaaaagagctcaagagtggcgct
ttacaggtgtgcgtgggaacgcattcgctttttgatgttgagctttttaatcctgcgtta
gtggttgtcgatgaagagcataaatttggggtcaaacaaaaagagaaactgaaaaatttt
agagaaaatgtacacattctctccatgagcgcaaccccgattcctagaagtctcaatatg
gcgttaagctccatcaaacagtattcacagcttctcacacctcctagtgatagagaagat
gttcgtacctttgtcaaagagtacgatgaaaaagtgattaaagaggcaattttgcgtgaa
atgaggcggggtggtcaaatcttttttgtgcacaatcgcattgcgaccattgaagcaaaa
cgtaaagagttactctctatgatgcccaatttgcgtattttaacgcttcactctgaaatt
agtgccagtgtgaccgaaaaagagatgttgcgttttgaagagaaagcgtatgacctactt
ttaagcacatcgattatcgaatcgggtattcatattcctaatgtcaatacgattatgatt
gatgcggcggatcattttggtatggcagatttgcatcagttacgagggcgtgtagggcgc
agtaaacgccaaggcttttgttactttttagtgaaagaaaaagagagtctctccgaatcg
gctaaaaaacgtctcattgcgcttgagtccaattcctatttggggagtggttcgatttta
gcgtatcatgatttggaaattcgaggcggtggaaacttagtaggcgaggcgcaaagtggg
catcttaaaaatattgggtatgccttgtatcttaggatgcttgaggatgcgattaatgcg
ttaatgggaaaaacacctgtggcgtcacgagaagtggatatgaaactttccattagtgcg
tttattagcgatagttacattgctgaagatagggtgcgcttagagctttataggcgcttg
agtcgttgtggaagcattcatgaggtgcttgagattgaagaagagatgctggatcgtttt
gggaaaatggatgtgcctacgaaacaatttttacagcttattgaaatcaaaattttagcg
acacaacatcatattgtcttagtttcaaattatgggcagatgattacgttgaaatatgaa
gatgagaaaaaacaaaccttacaatctcgtagcagagatgatgacgatgtgattgatacg
gttttacactatttaaggaatccatcgtga
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