Sulfurospirillum deleyianum: Sdel_2125
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Entry
Sdel_2125 CDS
T01126
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sdl
Sulfurospirillum deleyianum
Pathway
sdl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sdel_2125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdl03019
]
Sdel_2125
03009 Ribosome biogenesis [BR:
sdl03009
]
Sdel_2125
Enzymes [BR:
sdl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sdel_2125
Messenger RNA biogenesis [BR:
sdl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sdel_2125
Ribosome biogenesis [BR:
sdl03009
]
Prokaryotic type
rRNA helicases
Sdel_2125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ACZ13137
UniProt:
D1B4W7
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All DBs
Position
2132662..2134413
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AA seq
583 aa
AA seq
DB search
MQTFESFGLHQDILKAINEAGFTEPSPVQAEAIPLVLQGHDIVAQAQTGTGKTAAFGLPT
MSMIDANQNRVQLLVITPTRELATQVSDELYSLGRFCGIKTVTIYGGSSYSRQIGLIEKG
ASVIVATPGRMLDLLKNGRLPGFAPKMVVLDEADEMLDMGFLEDIEEIFTYLPKERQTLL
FSATMPEPIKRLASKILHEPKFVSITPKDHTTNEDIEQLYYVINEYERDDAMIRLLDALE
PEKSIVFCRTKKEVDRLSTQLMAVGYAAKGLHGDMEQNQRESVIKAFRSSQIEILVATDV
AARGLNVADISHVFNYHMPFDPESYVHRIGRTGRAGKKGTAITLVTPIEFHSMQRIGKKV
GSKIEHRIVPNLRDVKENKLIKIADDIKNAELNENASKLLAILEEEMDMSQIALKLLSNL
LKENTPVGPDKIGLDKKTLESVVKNIEERENSRGGRSGYRGNSGGRSSGGYRGSSSGSRD
GGSYRGTSSGSRDGGGYKGSNPRDAGSRDSRPPRGDSAPRGESRNPFAKEGSSTGSRDGG
GYKGNRDTDSRPPRAPRTDRPSAPRSDAGRAPKTAPRNAYKKD
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacatttgaatcctttggtcttcaccaagatattctcaaagctatcaacgaggca
ggctttacagagccaagtcccgtacaagcagaggcaattcctctcgttcttcaaggtcac
gacattgtcgcacaagcgcaaacaggtacaggtaaaaccgccgcgtttggtcttccaacg
atgagtatgattgatgccaatcaaaacagagtccaacttttggtcatcaccccaacccgt
gaacttgccacccaagtcagcgatgaactttactcattaggtcgtttttgtggcattaaa
accgtaaccatttatggtggtagctcttacagccgtcaaattggtcttatcgaaaaaggg
gcaagcgttattgttgcaacccctggtcgtatgttagacttacttaaaaatggcagactc
cctggtttcgcccctaaaatggtggttttagatgaagccgatgagatgctagacatgggc
tttttagaggatattgaagagattttcacttaccttccaaaagagcgtcaaaccctactt
ttttcagcaacaatgcctgagcctattaaacgattggcgagtaaaattttacacgaacca
aaatttgtcagcatcacgccaaaagaccataccaccaacgaagacattgaacaactctat
tatgtcattaacgaatatgagagagacgatgcgatgattcgtcttttagacgctcttgag
cctgaaaaatccatcgtgttctgccgtaccaaaaaagaggttgatagactctccactcaa
ctgatggcagtcggttacgcagccaaaggcttacacggtgatatggagcaaaatcaacgt
gagagcgttattaaagcgtttcgtagttcacaaatcgaaatcctcgtcgcaaccgatgtt
gccgcacgtggtttaaatgttgcggacatcagccacgttttcaactaccatatgccattt
gatccagagagttatgtacatagaattggtagaacaggacgtgcgggtaaaaaaggtaca
gcaattacattggtgacacctattgagtttcactctatgcaaagaattggtaaaaaagtc
ggctcaaaaattgagcacagaattgtgccaaatttacgagacgttaaagaaaataagctc
attaaaattgcagacgacatcaaaaacgcagagctaaatgaaaatgcgtcaaaacttctt
gctattttggaagaagagatggatatgtctcaaatcgcactgaaacttctctcaaatctt
ctcaaagagaacacacccgtcggtccagataaaatcggtttggataagaaaaccttagaa
agtgttgttaaaaacattgaagagcgtgaaaacagccgtggcggacgtagcggttataga
ggaaactcaggtggtagaagcagtggcggttatagaggaagctctagtggaagccgtgat
ggcggtagctatagaggaacgtcaagtggttcacgtgatggtggcggatacaaaggctct
aaccctagagatgcgggaagcagagattcccgtcctccaagaggggatagcgcaccacgt
ggtgagagccgcaacccttttgcgaaagagggaagttcaacaggttcacgtgatggcggt
ggctacaaaggcaatcgtgataccgatagccgaccaccacgcgctccaagaactgataga
ccttctgcaccacgcagtgatgcaggtcgtgctccaaaaacagcacctcgtaacgcttac
aaaaaagattaa
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