Stegodyphus dumicola: 118185341
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Entry
118185341 CDS
T07385
Name
(RefSeq) uncharacterized protein LOC118185341
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
sdm
Stegodyphus dumicola
Pathway
sdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118185341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdm03000
]
118185341
03019 Messenger RNA biogenesis [BR:
sdm03019
]
118185341
04121 Ubiquitin system [BR:
sdm04121
]
118185341
Enzymes [BR:
sdm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118185341
Transcription factors [BR:
sdm03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
118185341
Messenger RNA biogenesis [BR:
sdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118185341
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118185341
Ubiquitin system [BR:
sdm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118185341
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
zf-RING_4
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
118185341
NCBI-ProteinID:
XP_035211072
LinkDB
All DBs
Position
Unknown
AA seq
732 aa
AA seq
DB search
MRLKEDIKEPVEEMSGGEEKKCPKCTEVLDVEEINFFPCECYYQVYPDNPVNFKPMTQEQ
MLKIRNRKKKKDLEKKQKIDEIKKNLADRRVLQKNLVFIVGLPQGLESDKEKFEKIMEPF
KQIGPVLKCMVNERTNYAGNQGASACAYVTYQNKVDAVKAIKTLIGTKVEGRTIKVSMGT
TKYCSNFLKNVQCTKQDCMYLHGIAENEISFTKEEMQLGNHIEIEQRLCEEILANDLKEK
SQDSQLEESNISQKTIQLSSVNNEQSQSEELSRVNSESSLDSPLTSSTESDRPPSVSIKE
ETVGFNYIQSNFQSSLDFSDPAQSDHHVELCDSSEKRVISVEQPQTFQETLAVNGFSNSS
DFHNILHAFQQPSKNTVAQGSFPTAQNSNLSVPSCLMPWKGNSRKETSTLNPLAAPFQNH
SSYFSNINEEANCVHNGIDEFPVYEPTLRDILGFDPVQVALDNLNQLCIEERCNQIRQRF
LNSRSQNLFGYSSTDGPDPRRLRVTQTPPNRLAHPDSRPHLLMSNLQQRLRNAPDFFPNV
ATQPHFQYPTPAPRESVPYSTPTRSPAIENLMQLNNATGSGRLCMPVVPQISQTDLLNSQ
MLSSPSSFVSDFSQRQLNQFQNRDYLDSISLPALQQQQQQRLQQQHFAQPVVNNNAQLPP
LYRNANLNMRVPQLPPPLPQQQQRLMNDFSARQFQQLGLNFNNLLLQDLQYQHPNNLHIP
SSNHMGMPPPGL
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttaaaagaagatataaaagagcctgtcgaagaaatgtctggaggagaagaaaag
aaatgtcccaagtgtactgaggtgctagatgttgaagaaatcaatttctttccctgtgaa
tgttactatcaggtttatccagacaatccagtaaatttcaagcctatgacacaagaacaa
atgctgaaaatcagaaatcggaaaaagaaaaaagatttagagaaaaagcagaaaattgat
gaaattaaaaaaaatctggctgatcgcagagtgctccaaaagaatttggtgttcatcgtt
ggtctgcctcaggggcttgagtctgataaagaaaaatttgaaaaaatcatggaacctttt
aaacaaataggtcctgttctaaagtgtatggttaatgagcggacgaattatgctggaaat
cagggagcgagtgcttgtgcatatgtaacatatcaaaacaaagtagatgcagtaaaagct
ataaaaactttaataggcacaaaagtggaaggccgaactattaaagtatctatgggaaca
acaaaatactgtagtaattttttaaagaatgttcaatgtacgaaacaagactgtatgtat
ctgcatgggattgcagaaaatgaaattagttttaccaaagaagaaatgcaattagggaac
catatagaaattgaacaaaggctctgtgaagaaattttagccaatgacttaaaagaaaaa
agtcaagatagccaacttgaagaatcaaacatcagccaaaaaacaatacaattgtcatct
gtaaataatgaacaaagtcagtctgaagaactttcaagggtaaattctgaaagttcacta
gattcaccattaacatcaagtacagagagtgacagaccaccgtctgtatccatcaaagaa
gaaacagtagggtttaattacattcagagtaatttccaatcaagtttggatttctcagat
cctgcccaaagtgatcatcatgtggaattatgtgattcaagtgaaaagcgagtcatttct
gtggaacaaccgcaaacatttcaagaaactttagcagtgaatggctttagcaattccagc
gacttccataatatattgcatgcatttcagcagccgtccaaaaacacagttgcccaaggt
tcttttcccacagcacaaaactcaaatttgtctgtacctagttgtttaatgccatggaaa
ggaaattcacgtaaagaaactagtacattgaatcctttagcagctccatttcaaaatcat
tcatcctatttctctaatatcaatgaagaagcaaattgtgtacataatggaatagatgaa
tttccagtttatgaaccaactctacgagatatattaggttttgatcctgttcaggttgca
ctagataacttgaatcaactttgtatagaggaaaggtgcaaccaaatccgtcaaagattt
ttaaactcaagatctcaaaatttatttggttattcaagcacagatggtccagaccctcga
aggttacgggtaacacaaacaccaccaaataggcttgcacatccagattctaggcctcat
ttgcttatgtcaaacctccaacaaaggctgagaaatgctccagatttttttccaaatgtt
gctacacaacctcattttcagtatccaaccccagcacctcgcgaatcagttccttattca
acgcctactcgatcacctgcaatagaaaatttaatgcaacttaataacgctacaggatct
ggcagattgtgtatgcctgtcgttcctcaaatttctcagaccgacttgttgaacagtcag
atgttaagcagtccaagttcctttgtgtcagatttcagtcagcgtcagttaaaccagttt
cagaatagagactatcttgattctatatcacttcctgcattacaacaacaacaacaacag
aggttacagcagcaacattttgctcagccagtggtgaacaataatgctcaacttccacca
ttgtacagaaatgccaatttaaatatgagagtgccacagctgccaccaccactaccacaa
caacagcagagactaatgaatgatttctcagcaagacaattccagcagctcggattaaac
tttaataatctcttattacaagatctacagtatcagcaccccaacaatcttcatattcca
tcatctaatcatatgggaatgccacctccaggtctgtga
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