Stegodyphus dumicola: 118188163
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Entry
118188163 CDS
T07385
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sdm
Stegodyphus dumicola
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdm03016
]
118188163
Enzymes [BR:
sdm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
118188163
Transfer RNA biogenesis [BR:
sdm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
118188163
Prokaryotic type
tRNA splicing ligases
118188163
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
118188163
NCBI-ProteinID:
XP_035214423
LinkDB
All DBs
Position
Unknown
AA seq
408 aa
AA seq
DB search
MKFLYILFFFFFSPNLGGVGFDINCGVRLLRTNLMEKDVQPIKEQLAQSMFDHIPVGVGS
KGIIPMNARDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLNADPAKVSMKAKKRGLP
QLGTLGAGNHYAEIQVVDEIYDKNNASKMGIDCKGQVCVMIHSGSRGFGHQVATDALVAM
EKAMKRDQIEVNDRQLACAHINSQEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKAYN
TTPDDLDMHVIYDVSHNIAKIEKHYIDGKERTLLVHRKGSTRAFPPHHPLIPVDYQLTGQ
PVLIGGTMGTCSYVLTGTEMGMQETFGTTCHGAGRALSRAKSRRNLDYIDVLNELADKGI
SIRVASPKLVMEEAPDSYKNVTDVVDSCHEAGISKKCIKLRPIAVIKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttctttacattcttttttttttttttttttccccaaatctaggtggtgttggt
tttgatataaattgtggtgttcgtttgctgagaacaaatttaatggaaaaagatgttcaa
cccattaaagaacaacttgctcaaagcatgtttgatcacatacctgttggagttggatca
aaaggaataattccaatgaatgctagagaccttgaagaggctttagagatgggagtagac
tggtctcttagagaaggatatgcttgggcagaagataaagaacattgtgaagaatatggc
agaatgctaaatgctgatcctgcaaaagtttccatgaaagctaagaagcgaggattacca
caacttggaacgcttggagctggtaatcactatgcagaaattcaagttgttgatgaaatt
tatgacaaaaacaatgctagtaaaatgggtattgattgtaaaggtcaagtctgtgttatg
atacatagtggaagtagaggatttggacatcaggttgcaacagatgctcttgtggcaatg
gaaaaagctatgaaacgagatcagattgaagttaatgatcggcagttagcctgtgcacac
attaattcacaagagggtcaagattatcttaaatctatggcagcggctgcaaactttgct
tgggtgaatagatccagcatgacatttttgagcagacaggcctttgcaaaagcatataac
accacgccagatgatttagatatgcatgttatatatgatgtgtcgcataatattgccaaa
attgaaaaacattacattgatggaaaagaaagaactttattagttcacagaaaaggttca
acaagagcttttccacctcaccatccgcttataccagttgattatcagcttactggacaa
cctgtacttattggtggaactatgggaacatgcagttatgtattaactggaactgaaatg
ggaatgcaagaaacatttggaactacatgccatggtgcaggacgagctttatctagggca
aaatctcgtagaaacctggattatattgatgttttaaatgagctggctgacaaaggaatc
tcaattagagtagcttctcccaagttagtcatggaagaagctccagattcttataaaaat
gttactgatgttgtagattcttgtcatgaagctggtattagcaagaaatgtattaaatta
agacctattgcagttattaaaggttaa
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