Stegodyphus dumicola: 118188174
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Entry
118188174 CDS
T07385
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
sdm
Stegodyphus dumicola
Pathway
sdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118188174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdm03041
]
118188174
Enzymes [BR:
sdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118188174
Spliceosome [BR:
sdm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118188174
Complex C
U5 SnRNP specific factors
118188174
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_19
AAA_11
Motif
Other DBs
NCBI-GeneID:
118188174
NCBI-ProteinID:
XP_035214433
LinkDB
All DBs
Position
Unknown
AA seq
2139 aa
AA seq
DB search
MADAAARSLQFEYKANSNLVLQADTRLIERRPRDEATGEVVSLVGKLEGSRMGDRYQRTK
PAKAEEKKAKRMKRDESRYDFSKLKGQTLLSEGIEDMVGILYRPKTAETKQTYEVLLSFI
QEALGDQPRDILCGAADEVLAVLKNEKIRDDKDRRRETEALLGQLAQERYAVLVNLCKKI
TDYGVDDKVQTTEENIDETYGVNVQFEESDEEEEDMCGEVREEDSNDENEGDEAIVDSTL
HATNLGSSQDTMGKSGKGLHPRDIDAYWLQRKLSKFYDDPVVAQTKAGEVLDILKTADDD
REVENRLVFLLGYNQFEFIKILRQHRQTILYCTLLASLQSGAEKTKLKEKMQSDPELEKI
LRQLENTEKEDIIQEERERRAQVRQARVDADLEAMDIDGESVPQLQQCRVLDLEDLTFTQ
GSHFMANKRCQLPDGSFRKQRRGYEEIHVPALKPKPFESSESLMPIEKLPKYVQHAFEGY
KSLNRIQSRLCKTALETDENLLLCAPTGAGKTNVALLCMMREIGKHINSDGTINADEFKI
IYIAPMRSLVQEMVGNFSKRLKSYNIQVSELTGDHQLTREQINATQVIVCTPEKWDIVTR
KGGERTYTQLVRLMIFDEIHLLHDERGPVLEALVARTIRNIEMTQEEVRLVGLSATLPNY
EDVASFLRVTPATGLFYFDNSFRPVPLEQQYIGITEKKPIKRFMLMKEILYEKVMEHAGK
NQVLIFVHSRKETGKTAREIRDMCLEKDTLGQFLRGGSASTAVLETEADHVKNHELKNLL
PYGFAIHHAGMSRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYSPEK
GRWVELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLFNQQLPIESQLISKLP
DMLNAEIVLGNIQSMKEAVTWLGYTYLYIRMLRSPSLYGVQVNSEDPLLEKHRADLIYTA
ATLLDKSNLLKFDKKAGIFQVTEVGRIASHYYCTYETMTTYTQLLKQTLSEIELFRVFSL
SSEFKYLNIREEEKLELQKLVERVPIPIKESIEESSAKVNVLLQAYISQLKLEGLALMAD
MVYITQSADRLMRAIFEIVLHRGWAQLTDKALSLCKMIKRRMWQSMTPLRQFKKIPDEVV
KKIEKKNFPWERLYDLGPNEIGELLRMPKLGKTVHKYVHQFPKLDLSAHIQPVTRATLRV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKSKFCQDEHIVKFFVPVFE
PLPPQYFIRIVSDQWIGSETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPFFESL
YKDKFPYFNPIQTQVFNSVYNSDDNVFVGAPTGSGKTICAEFAILRLLSQNPDGRCVYVT
PKEPLAEIIYADWTSKFSTVMNKKVVLLTGETSTDLKLLAKGNIIISTPEKWDVLSRRWK
QRKNVQNINLFIVDELQLIGGEDGPILEVICSRMRYISSHLDKPVRIVALSSSLANAKDV
AQWLGASPNSTFNFPPNVRPVQLELHIQGFNITHNASRLLAMSKPVYQAVTRLSPRKPVI
VFVPSRKQSRLTAIDILTYCASEAQPARFLHCTDSDIQPFVDKIVDKTLKETISNGVAYL
HEGLNSSDSKIIGQLFESGAIQVVVVSRNLCWGLSLAAHLVVIMDTQYYNGKIHTYEDYS
ITDVLQMVGRANRPKYDEDGKCVLLCQSSKKDFFTKFLYEPLPVESHLDHCLHDHFNAEI
VTKTIDNKQDAVDYLTWTFLYRRMTQNPNYYNLQGVTHRHLSDHLSELVENTLNDLEQSR
CISIEDEMDVSPLNLGMIAAYYYINYTTIELFSMSLNSKTKVRGLLEIISSAAEYESVPI
RHREDNLLKQLANRLPHKLANPKFSDPHVKTNLLLQAHLSRMQLSAELQSDTEDILSKAV
RLIQACVDVLSSNGWLSPALAAMELAQMVTQGMWNKDSYLKQLPHFTPEIVKRCTEMGVE
TVFDVMELEDEDRNKLLQLNDAQMADVARFCNRYPNIELSYEVQDKESIMSGQTVNVSVQ
LEREDEVTGPVIAPLFPQRREEGWWVVIGDPKTNSLISIKRLTLQQKAKVKLDFVAPNAG
EHTYTLYFMSDSYMGCDQEYRFNIRVNESNRKGSDSDSD
NT seq
6420 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcagctgcccgttcgttgcaatttgaatataaagcaaattctaatttagtt
ttacaagctgacactcgacttatagaacgtcgtcccagagatgaagctaccggtgaagtt
gtatctcttgtgggaaagttggagggctcccgtatgggtgatcgatatcaaagaacgaag
ccggccaaagcagaggagaaaaaagctaagcgcatgaaacgcgatgaatctaggtatgat
ttttctaaacttaaaggtcaaactttactatctgaaggcatagaagatatggtgggtatt
ttgtacagacctaaaacagcagaaactaagcaaacatacgaagttttattaagtttcatt
caagaagctttgggtgatcagcctagggacattctctgcggtgctgcggatgaagttctt
gctgttctgaaaaatgaaaaaattcgagacgataaagatagacgacgggaaacagaagct
cttctcggccaattagctcaagagaggtatgctgttttggttaatctttgcaagaaaatt
accgattacggtgtagatgataaggttcagactactgaagaaaacattgatgaaacatat
ggtgtaaatgttcagtttgaagagtctgatgaagaagaggaagatatgtgtggagaagta
agagaagaggattctaatgatgaaaatgaaggggatgaagccattgttgatagtacactt
catgcaacaaacttaggttcaagccaggataccatgggtaaaagtggtaaaggtttacat
cctcgtgacattgatgcttactggttgcaaagaaaactgagcaaattttatgatgatcct
gttgttgcacaaacaaaagctggagaagttttggacatattgaaaacagctgatgatgac
agagaggttgaaaatcggttagtatttctcttaggttataatcagtttgagttcattaag
attttacggcagcatcgtcaaacaatattgtattgcacattacttgcttcattacaaagt
ggagcagaaaaaactaagctgaaagaaaaaatgcaaagtgatcctgaattagaaaaaatt
ttgagacagcttgaaaatacagaaaaagaagatataattcaagaagaaagggaacgaaga
gctcaggttcgtcaggctagagttgatgctgatttagaagccatggacattgatggagaa
agtgtgcctcaacttcagcaatgtcgtgttttggatttagaagatttgacatttacacag
ggtagtcattttatggccaataaacgttgtcagttacctgatgggtcatttcgtaagcag
agacgtggatatgaagaaattcacgttccagctttgaaacccaaaccatttgaatccagt
gaatccttaatgcctatagagaaattacccaaatatgttcaacatgcatttgaaggttac
aaaagcttgaaccgtatacaaagcagattatgcaaaactgctctagaaacagatgaaaat
ttacttctctgtgctcctacaggagcaggtaagacaaatgttgcattattatgtatgatg
cgagaaataggaaaacatataaattctgatgggacaattaatgctgatgaatttaaaatc
atatacattgcaccaatgcgttctttggtgcaagaaatggtggggaattttagcaaacgt
cttaaatcgtacaacattcaggtgtctgagcttacaggtgatcatcagttaaccagagaa
caaataaatgcaactcaggttattgtatgtactcctgaaaaatgggatatagtgacaaga
aaaggtggtgaaaggacatatacacagttagtcaggcttatgatttttgatgaaattcat
cttttgcatgatgaaagaggtccagttcttgaagctttagttgctagaactatccgtaac
attgaaatgacacaagaagaagtgagattagtaggattgagtgctacattgcctaattat
gaagatgtagcaagttttttgcgtgtaacaccagctactggtttgttttattttgataat
agtttcagacctgttccattagaacagcaatatattggcataactgagaaaaagcctatc
aagcgttttatgttaatgaaagaaatcctgtacgaaaaagtcatggaacatgcaggaaaa
aatcaagttttaatatttgttcattcacgaaaagaaactggcaaaactgctcgagaaata
cgagatatgtgtttggaaaaagatacattggggcagtttcttcgaggtggttcggcttct
actgctgttttagagacagaagctgatcatgtaaagaatcacgagttaaaaaatttatta
ccatatggttttgcaattcatcatgctggtatgagccgtgtagatcgtacattagttgaa
gatttatttgcagatcgtcacattcaagttcttgtttctactgctacactagcttggggt
gtgaatcttccagctcatactgttataattaaaggtactcaaatatatagtccagaaaaa
ggtcgttgggttgagttaggagcattagatgtgcttcaaatgttaggtagagctggtaga
ccacagtatgatactaaaggtgaaggaatattgattaccaatcacagtgaattgcagtat
tatctgtcactttttaatcagcagttgccaattgaaagccagttgattagtaaactgcca
gatatgctaaatgctgaaattgttctgggcaatatccaaagtatgaaagaagctgttact
tggctaggttatacctatttatatatccgtatgctgcgtagtccatcgctttatggagtg
caagttaattctgaagatccacttttggaaaagcatcgagcagatttgatttacacagct
gctaccttattagataaaagtaatttactaaaatttgacaaaaaagcgggtatttttcaa
gtcacagaagtaggcagaattgcaagtcattattactgtacatatgaaacaatgactact
tatactcagctcttaaagcaaactttgagcgagattgaacttttcagagtgttttcatta
tcaagtgaatttaaatatttaaatatccgtgaagaagaaaaactggagttgcagaaatta
gtggaaagagttcctataccaatcaaagaaagtattgaagaatcgagtgctaaggtcaat
gtgttacttcaagcatatatatctcaattgaaattggaagggcttgctcttatggcagat
atggtgtacataacacagagtgctgatagattgatgcgagcaatatttgagattgttttg
catagaggttgggcacagttaactgataaagctcttagtttatgtaagatgataaaaagg
aggatgtggcaatctatgacaccattgaggcagtttaagaaaataccagatgaagttgta
aagaaaattgagaaaaagaatttcccatgggaacgattgtatgatcttgggcctaatgaa
attggagaacttttaagaatgcctaaactaggtaaaactgttcataaatatgtacatcag
tttcctaaattggatctttctgctcatattcaacctgtaactagagcaacgttgcgagtg
gagctaacaataactccagattttcagtgggatgaaaaagtgcatggtagttctgaagcc
ttttggattttagttgaggatgttgacagtgaagtgattctccatcacgaatattttcta
ctgaaaagtaaattttgtcaagatgagcacattgtgaagttttttgtaccggtttttgaa
cctttgcctccacaatatttcatacgaatagtttctgatcagtggataggatctgaaact
caactaccagtttcatttcgccatcttattttacctgaaaaatatccacctcctactgaa
cttctagatttacaaccacttcccgtatcagcactcaggaatccattctttgaatcatta
tacaaggacaagtttccttacttcaatcctatccagacacaagttttcaattcagtttat
aacagcgatgacaatgtatttgttggagcacctactggaagtggaaagacaatttgtgca
gagtttgcaattttgcgtttattatctcagaatccagatggaagatgcgtatatgtcact
ccgaaagaaccacttgctgaaataatttatgctgattggacttcaaaattttctactgtg
atgaacaaaaaggttgtactattaactggggaaactagcacagatctaaaattgttggct
aaagggaatattattatcagtactccagaaaaatgggatgttctatctcgtagatggaag
cagagaaaaaatgtacaaaatataaatttattcattgttgatgaattgcagttgattggt
ggtgaagatggtcccattttagaagttatatgctcccggatgcgatacatatcatctcac
cttgataaaccagttagaattgtggctttgagttcatcacttgcaaatgctaaagatgtt
gctcaatggcttggtgctagcccgaattccacttttaattttcctccaaatgtaagacct
gttcaactggagcttcacattcaaggtttcaatataactcataatgcatctcgccttctt
gccatgagcaagcctgtttatcaagcagtaacaagattatcgccaagaaaacctgtaatt
gtttttgttccatcaaggaaacaatctcgtctcactgcaatagatattttaacatactgt
gcatcagaagctcaacctgctcgtttccttcattgcaccgatagtgatatacaacctttt
gttgacaaaatagtggataaaaccctgaaagaaactattagtaatggagtagcatatcta
catgaaggcttaaattccagtgacagtaaaattattggacagctatttgaaagtggtgct
attcaagttgttgttgtttcaagaaatctttgctggggattatcactagctgcacattta
gttgttatcatggatacacagtactataatggcaaaatacatacatatgaagattattct
attaccgatgtgcttcaaatggttggacgagcaaatcgtccaaagtatgatgaagatgga
aaatgtgtgcttttgtgtcaaagttcaaaaaaagatttctttacaaaattcctttacgag
ccgttgccagttgagagccatttggaccattgcttgcatgatcattttaatgctgaaatt
gtaactaaaactattgataataagcaagatgcagtcgattatcttacttggacattccta
taccgtcgtatgacacaaaatcccaattactataatctacaaggagttacacatcgtcac
ttatctgatcatttatcagaattggttgaaaatacactaaatgatttggagcagtcccgt
tgtatcagtattgaagatgaaatggatgtgtcaccattaaatttaggtatgattgctgct
tattattacattaattatacaacaattgaactgtttagcatgtctttaaatagcaaaacc
aaagtgagaggtctacttgaaatcataagttcagctgcagaatatgaaagtgtcccaatt
aggcatcgtgaggataatttgcttaaacagttggccaacagattgcctcataaattggct
aatccaaaatttagtgatccacatgtaaagactaatttgttacttcaggcccatttatct
cgtatgcaactttcagctgaattgcaatcagacactgaagatattctaagtaaagctgta
agattgattcaagcatgtgttgatgtattgagttcaaatggttggttgtcacctgctttg
gcagctatggaactggcacagatggtgactcaaggtatgtggaacaaagattcatatctg
aagcagttgcctcattttactccagaaattgtaaaacgttgtacagaaatgggtgtggaa
actgtttttgatgtaatggaacttgaagatgaggataggaataaactgttgcaacttaac
gatgcccagatggctgatgttgccaggttctgtaatcgatatcccaacattgaattgagt
tatgaagttcaagataaggaaagtattatgagtggtcagactgttaatgtcagtgtccag
cttgaaagagaagatgaagtgactggtcctgtgattgcacctctctttcctcagcggcgt
gaagagggttggtgggtggtgattggtgatcccaaaacaaattctctcatttccatcaaa
agacttacattacagcagaaggcaaaagtaaaattagattttgtagcaccaaatgctgga
gaacatacttatacattatactttatgagtgactcttatatgggctgtgatcaggaatac
agattcaacattagagttaatgagtcaaatagaaaaggctcagacagtgacagtgattaa
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integrated database retrieval system
