Stegodyphus dumicola: 118193783
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Entry
118193783 CDS
T07385
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
sdm
Stegodyphus dumicola
Pathway
sdm03015
mRNA surveillance pathway
sdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118193783
09123 Folding, sorting and degradation
03018 RNA degradation
118193783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdm03019
]
118193783
03041 Spliceosome [BR:
sdm03041
]
118193783
Messenger RNA biogenesis [BR:
sdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118193783
mRNA cycle factors
Stress granule specific factors
118193783
Spliceosome [BR:
sdm03041
]
Complex C
Other components
Complex C specific factors
118193783
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_occluded
RRM_7
RRM_5
Motif
Other DBs
NCBI-GeneID:
118193783
NCBI-ProteinID:
XP_035220816
LinkDB
All DBs
Position
Unknown
AA seq
651 aa
AA seq
DB search
MNPSGPNYPIASLYVGDLHADVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQ
QPVDAERALDTMNFDTVKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFS
AFGNILSCKVATDEESTSKGYGFVHFETEEANNAIMKVNGMLLNGRKVFVGKFIPRKERE
KLLGEKARRFMNVYIKNFGDDLDDEKLRELFEKYGKITSAKVMTDELGKAKGFGFVSFEE
PENAEKAVEDLNGKELNGKTLYVGRAQKKSERAAELKRRFELLKMERMNRYQGVNLYVKN
LDDAIDDERLRKEFAPFGTITSAKVMTDGNGRSKGFGFVCFSSPEEATKAVTEMNGRIVV
SKPLYVALAQRKEERKAHLASQYMQRMAGMRMQLGQMFNPGSAGYFVPTMPQAQRSYFPQ
MAQMRATPRWPTTQPQMRPGGQPAAAFQAMQSAPFARASCRPAVAASQNPGMRAGMNARP
ITGQQPTAAAAAASGTRVAAMGPTGVGAARPTSMASANVNQRPATYKYTSNMRNPPQPQT
VQQAVTQQAVAQQAVHIQGQEPLTASMLADANAQEQKQMLGERLFPVIHRWYPEMAGKIT
GMLLEIDNSELLHMLEHQESLKAKVEEAVAVLQAHHAKENISVAGGIKKEA
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgagtgggccgaattatcccattgcctctttgtatgttggagatctacatgct
gatgttacagaggccatgctttttgaaaaattttctacagcaggaccagttctttccata
agagtttgcagagatttgatcacacgtcgctcgctagggtatgcttatgttaattttcag
cagcctgttgatgctgaaagagcgttagacacaatgaactttgacactgtcaaaggaagg
ccaattagaattatgtggtcacagcgagatccatctctgagaaaatcaggtgtaggtaat
gtcttcataaagaacttggacaaaagtattgataacaaagccatgtatgacacattctct
gcctttggaaatatattatcgtgtaaagtagcaactgatgaggagagcacttcaaaaggc
tatggatttgttcattttgaaactgaagaagcaaataatgcgatcatgaaagtaaatggc
atgcttcttaatggcagaaaagtttttgttggaaaattcatcccccgtaaagagcgggag
aagctcttgggtgaaaaagcgcgtcgtttcatgaatgtttatatcaagaacttcggtgat
gatcttgatgatgaaaagctgagagagctgtttgaaaagtatggaaaaataacaagtgcc
aaggtaatgactgacgagcttggaaaagcgaaaggctttggattcgtaagctttgaagaa
ccagagaatgctgaaaaggctgttgaagatcttaatgggaaagaattaaatggaaagact
ttatatgttggtcgtgcacaaaagaaatctgaaagagcagcagaattgaagcgtagattt
gaattgttgaaaatggaacgtatgaatagataccaaggtgtaaatttatatgtcaagaat
cttgacgatgctatcgatgatgaacgcttaagaaaagaatttgcaccttttggaacaata
actagtgctaaagtcatgacagacggaaatggacgttccaagggatttggctttgtctgc
ttcagctctccagaagaagcaactaaagcagtaactgaaatgaatgggcgaattgttgtg
tctaaacctttgtatgttgctttagctcaacgtaaagaagaacgcaaagctcatttagct
tctcagtacatgcaacgaatggccgggatgcgcatgcagctgggacagatgtttaaccca
ggaagtgccggatattttgtaccaactatgcctcaagctcaaagaagttacttcccacaa
atggctcaaatgcgtgcaactcctcgatggcccaccactcagcctcagatgcgaccagga
ggtcaaccagctgcagcattccaagctatgcagtctgctccatttgctagagcaagctgc
cgtccagcagttgcagcttcgcaaaatccaggaatgagagccggtatgaatgctcgaccc
ataacaggccaacaacccactgctgcagcagctgctgcatctggaacaagagttgctgca
atgggtcctactggtgtaggtgctgcacgacctactagtatggcttctgcaaatgtcaat
caaagaccagccacatacaaatatacttccaacatgcgaaatccaccacaacctcaaaca
gttcaacaagctgttacccagcaagctgtggctcagcaagccgtgcatatacaaggccaa
gaacctttgactgcttccatgttagcagatgccaatgctcaagagcagaagcaaatgcta
ggtgaacgattgttccctgtaatccatcgttggtatcctgagatggctggaaagatcact
ggaatgttgttggaaatagataattctgaattgttgcatatgttagaacatcaagagtca
ctgaaagctaaagttgaagaagctgttgctgtacttcaagctcatcatgctaaagaaaat
atatcagttgccggaggcataaagaaagaagcttaa
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