Stegodyphus dumicola: 118195976
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Entry
118195976 CDS
T07385
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
sdm
Stegodyphus dumicola
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdm03041
]
118195976
Enzymes [BR:
sdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118195976
Spliceosome [BR:
sdm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118195976
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
Ank_2
Ank
DEAD
Ank_5
AAA_19
HA2_N
Ank_3
nSTAND3
ATPase
Ank_4
AAA_22
T2SSE
AAA_23
Motif
Other DBs
NCBI-GeneID:
118195976
NCBI-ProteinID:
XP_035223217
LinkDB
All DBs
Position
Unknown
AA seq
1435 aa
AA seq
DB search
MTRKNKIQVGEDFRIAVHIAIKNFRHNEEQKEYEFPSSLTSTERAYLHRYCQQLGLKSKS
RGEGANRFLTVYKKEGSTIVQADAVFELGHASHRQTVNLIQKFPITARERQELLPPTERD
RILGQDMRDVSRTIGRLGSGIPMVPQHRCENDFTPFRQSLPIWNSKEEIIQMISCHQVIL
ISGETGSGKTTQVPQFILDHHSIIGQPCRIICTQPRRIAAITVAERVAMERDDKIGQSVG
YQVRLESRVSPKTLLTFCTNGVLLRTLMGGDASVATVTHIIVDELHERDRYSDFLLIVLR
DLLLKFRNLKLVLMSASLDTQLFCKYFSNCPLIEVPGRVYDVKTFFLEDVLKGTCYTNKA
MIKYKKDFEKQKSRKKLDSWCSVQQPGYAASSSNAPSQGTENSNYYQDINIDELSLNCSE
IEGERVELDPHLAVAMDKAIEESWMSGTDDFTHLMQLILSENICVDYQHSETNVSPLMLA
AGRGNIDVVEQLLVLGASVHIKSSNGWTAIDWAYQFGHKDIGELLRSQWNGDTCSQNGTN
SVDGQLELSEEDKLLLDAYTHSIDEDKIDYELIVRLLQRICASQEDGSVLIFLPGYDDIV
RLRERIHSETQNIPESRIMLFTLHSQMQSSDQKRVFRPVPPGVRKVILSTNIAETSITIN
DVVFVIDCGKVKEKTYDALTGVTQLKSGWISKASAIQRRGRAGRCRPGLCYHLYSRLRFN
NFQKFQVPEILRVPIHELCLQAKLLAPPNAPIADFLAKAPDPPPFMVTRNAVTLLKTIDA
LDPWEELTELGLHLLDLPIEPRLGKMVLYSVVLKCLDPVLTIVCCLAYRDPFLLPSEPGQ
KRAAYMVKRKFACDTYSDHMALLRAFQAWQKAKAEGHEHSFCSRNFLSAATMEMIVGMRS
QLLGQLRASGFVKARGTGDIRDLNSNSEIWAVVKAALCAGTYPNLIRVDRDRQQFITQKE
TKVRFHHSSVLNKLPLSSKQTVAHMRKQIVAELPCDWLIYEEMMRTGSIAHAQCCTLVTP
ITVAIFSGPARLPLDALHEPDQAHLEGYMEEEDSEDDSKYDNQKAMFKIDDWISFRVEPE
IARLVLQLRQKWHALFLKRMHSPSKLLTQADEAVLRTVVGVLIAEDQALNLQQPSGIGQR
PRPLVMDYCSPVHMGRQMQSSPIHSTSFYNSSAAYSNPGFSCFSDEQSGISRSCSSASSY
NAAYSNCSSRTSSISQAFNSHSKLEFSQSHIGNSRIRYFIIKANTSRVVEVSMAKNIWAF
TPTTERKLISAIKEGRDVILIFSIQGSGHFQGFARFTPHISDHRPPEFRSANLGSCYQIE
WLKKANIPFQSTRHLQNAWNENRKVQISRDGQELEPTVGESLCQLIVKGQPQPIFTSDCI
KTNRRHLGYCRENFTNDSNPVSRNQMQWDPQNQVSASWYDSSCSAGQKYWSQSNN
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgacgaggaaaaataaaatacaagtaggggaagattttcgtattgctgttcatatcgca
ataaaaaatttccgtcataatgaagaacagaaagaatatgagtttccatcttccttaact
tcaactgaaagagcatacttacatcgatattgtcagcagctgggtttaaaatcgaagagc
agaggtgaaggagctaacagatttttgactgtgtacaaaaaggaaggttcaacaattgta
caagctgatgccgtctttgagctgggccatgcatctcacagacaaacagtcaatctgatt
cagaagtttcctattactgcaagagaaagacaagagctcttacctccaacagaaagagat
cgtattttaggccaagacatgcgggatgtaagtcgcaccataggcaggcttggtagtgga
attccaatggtgccacagcatagatgtgaaaatgacttcactccatttcgtcaaagtttg
cctatatggaacagcaaagaagaaataattcaaatgatatcttgccatcaagtgatttta
atttctggtgaaactggcagtggcaaaacaactcaggtaccacagtttatcctagatcat
catagcattattggtcagccttgtcgtattatatgcactcagccacgcagaatagctgct
ataactgttgctgaacgggttgccatggaacgggatgataaaattgggcaaagtgtaggg
tatcaagtacggttagagagcagagtatcaccaaagacacttcttactttctgtacaaat
ggtgtgcttctgcgaactcttatgggtggtgatgcttcagttgctacagtaacacatatc
attgtggatgaacttcatgaaagggatcgctacagtgattttttgcttattgtgctgcga
gatttacttctgaagtttagaaacctgaaacttgtactaatgtctgcttcactagatact
caattattttgcaaatatttcagcaactgtcctctgattgaagttcctgggagagtttat
gatgtgaaaacatttttccttgaagatgtacttaagggaacatgttacacaaacaaggct
atgatcaaatataaaaaagattttgagaagcaaaaatcaaggaaaaaattagattcttgg
tgttcagttcaacaacctggatatgctgcttcctcttctaatgcaccatctcaaggaaca
gaaaatagtaactattatcaggatattaatatagatgagctttcattgaactgcagtgaa
attgaaggagaaagagtagagttagatcctcatttagctgttgctatggacaaagctata
gaagaaagctggatgtctggaacagatgattttacacatttaatgcaacttattttgtca
gaaaacatttgtgttgactatcagcatagtgaaacaaatgttagtccattaatgctagct
gcaggtagaggaaatattgatgtagttgagcaattattagtcctgggggctagtgtccat
atcaaatcttcaaatggttggacagcaattgattgggcatatcagtttggacataaagat
attggagagttattaagaagccaatggaatggtgatacttgctctcagaatggaacaaat
tctgtagatgggcaactagaactttctgaagaagataaattgctactagatgcttatact
catagtattgatgaagataaaattgattatgaattaatagttcgacttctgcaacgaata
tgtgctagtcaagaagatggttctgtgctgatatttttgccaggatatgatgatattgtt
cggttacgagaaagaattcacagtgaaactcaaaacataccagaaagcagaattatgttg
tttactcttcattcacaaatgcaaagttcagatcagaagcgtgttttcagacctgttcct
cccggtgttagaaaagttattttatctacaaatatagctgaaactagcattaccattaat
gatgttgtgtttgtaatagattgtggaaaagtgaaggagaaaacatatgatgctttaact
ggtgtcactcaattgaaatcaggttggatatcaaaagcaagtgccatacagagaagaggc
agagctggtcgttgtcgaccaggcttgtgttatcatttatacagtcgactgcgtttcaac
aattttcagaaatttcaagttcctgaaattctcagagttcctattcatgaattatgtttg
caggcaaaacttcttgctccacctaatgcaccaatagctgacttcttggcaaaggcacct
gatcctccaccttttatggttactagaaatgcagtaactttactgaagaccattgatgct
cttgatccttgggaagaattaacagaactgggattacatctgcttgatttgccaattgaa
ccaaggcttggaaaaatggtgttatattctgtagttctaaagtgtttggatcctgtactt
actattgtttgttgtttggcataccgtgatccatttcttttaccatctgaacctggccag
aaaagagcggcatatatggttaagaggaaatttgcttgtgacacttacagtgatcatatg
gcattactgagagcgtttcaggcatggcagaaggccaaagctgaaggccatgaacatagc
ttttgctctagaaactttctttctgctgctacaatggaaatgatagtcggcatgaggtca
cagttattagggcagctcagggcatctggatttgtaaaagcccgtggaacaggcgatatc
cgtgacttaaatagcaattctgaaatatgggctgttgttaaagcagcactttgtgctgga
acatatcctaacttaataagagttgacagagatcgtcaacaatttataacgcagaaagag
actaaagttagatttcatcattcatctgttttgaacaagttaccactatcatccaagcaa
actgtggctcacatgcgtaaacaaatagttgctgagttgccttgtgattggttaatatat
gaagaaatgatgcgtactggcagtatagcacacgctcagtgctgtactcttgtcacacct
ataactgttgctatattttctggtccagctcgtctacctttggatgcactgcatgaacct
gatcaagctcatctagaaggctacatggaagaagaggacagtgaagatgattcaaaatat
gacaaccaaaaggctatgtttaaaatagatgactggatatcattccgagttgaaccagag
attgctcgtttagtgcttcagttacgtcaaaaatggcatgcattatttttaaaacgaatg
cattcaccttctaaattacttactcaagctgatgaggctgttttacgcactgtagtaggt
gttttaattgctgaagatcaagcacttaatcttcagcaaccatctggaattggacagcgt
cctcggcccttggtgatggattactgttctccagttcatatgggtagacagatgcaaagt
agcccaattcacagtactagcttttataattcttcagctgcatacagcaatccagggttt
tcatgcttctcagatgaacaatctggcatttcacgatcttgttcatctgcttccagttat
aatgctgcatacagcaactgcagttcacgcacaagttcaatatctcaagcatttaatagc
cattcaaaactagaattttctcagtctcatattggaaattccagaatccgatacttcata
ataaaagccaatacctcaagagttgttgaagtatctatggcaaaaaatatttgggctttt
acaccaaccactgaaaggaagctcatatcagcaataaaggagggaagggatgtaatcctg
atattttccatacaaggaagtggacattttcaaggatttgcacgatttactcctcacatt
tcagatcatcgtcctccagaatttcgttcagccaatcttgggtcatgttaccaaattgag
tggcttaaaaaggcaaacatacctttccaaagcactcgtcatttgcaaaatgcatggaat
gaaaacaggaaagtccagatctcccgagatggccaggagctagaaccaactgttggtgaa
tcattgtgccagcttattgttaaaggtcagcctcagccaatttttacatctgactgcata
aaaacaaatcgaaggcatttaggttattgtagagaaaattttactaatgattcaaatcca
gtaagcagaaatcaaatgcaatgggatcctcaaaatcaggtttcagcttcatggtatgat
tcatcttgttcagcaggccaaaaatattggtcccaatcaaataattaa
DBGET
integrated database retrieval system
