Stegodyphus dumicola: 118196933
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Entry
118196933 CDS
T07385
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sdm
Stegodyphus dumicola
Pathway
sdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118196933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdm03019
]
118196933
03041 Spliceosome [BR:
sdm03041
]
118196933
Messenger RNA biogenesis [BR:
sdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118196933
Spliceosome [BR:
sdm03041
]
Complex B
Other components
Prp19-related factors
118196933
Complex C
118196933
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_15
TPR_2
TPR_8
TPR_12
ARM_TT21_C
Mad3_BUB1_I
NRDE-2
SNAP
ARM_TT21
PPR
ATG1-like_MIT2
DALR_1
Motif
Other DBs
NCBI-GeneID:
118196933
NCBI-ProteinID:
XP_035224295
LinkDB
All DBs
Position
Unknown
AA seq
845 aa
AA seq
DB search
MILVMDSNTQTVLVDDDDIPYEEEILRNPYSVKHWLRYIEFKKDAPKQVINLLYERALRE
LPGSYIIWHKYLKLRRSQVRGKCVTDVCYEDVNSAFERALVFMHKMPRIWLDYCEFLMNQ
CQITKTRHVFDRALRALPITQHHRIWPLYLKFVSEKGIPETAVRVYRRYLKLCNEDAEDY
IEYLKQIDRLDEAAVKLAEIVNDEKFVSKHGKSKHQLWNELCELISENPDKVRSLNVDAI
ILDGLRRFTDQVGHFWNCLADYYIRSGLFDRARDIYEEAINTVMTVRDFTQVFDAYSQCE
ESLIKAKIELVQKGNSTEEDTLELDLRLAWFDYLLERRPLLLNSVLLRQNPHNVHEWHRR
IKLLEGKPKEIVSTYTEAVQKVDPKLACGKLHTLWVAFTKFYESHKQLNDARIIFEKAVQ
VPYTEVDDLATVWCEWAEMEIRHNNLERALKLVQRATALPVSKGSYHDQSLPVQERLYKS
LKVWLLYADLEEVLGTFKSIKAVYDRIIDLRIATPQVIINYGLFLEENKYFEEAFKAYEK
GISLFKWPNVYDIWNTYLVKFLKRYGGTKLERTRDLFEQCLEHCPRKYAKSIYLLYAKLE
EEHGLARHAMAVYERATKAVLPEEQFEMFNVYLKKAAEIYGVTYTRQIYEQAIEVLSDNE
AKQMCLKFADLERKLGEIDRARAIYAHCSQMCDPRTNVDFWDLWKEFEVRHGNEDTMREM
LRIRRSVQASVNTQVNFMSAQMLSAAVAASDGLTDTGKDSMQRLEAQAKVLATEAARDQP
INRNKVAFVRGEVTEPEKEISKAEVYNSDEINLDDVESDDEIKIDEIQLEERGVPDEVFG
QLKKD
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgattttagtgatggattcaaatactcaaactgtgcttgtagatgatgatgatattcca
tatgaagaagaaattcttagaaatccttattctgtaaagcactggttgagatatattgaa
ttcaaaaaagatgcaccaaaacaagtaataaatttgttgtatgaaagagctctaagagaa
ctgcctggaagttatatcatttggcataagtatttgaaactgcgaagatctcaagttcga
gggaagtgtgtcacagatgtgtgttatgaagatgttaacagtgcatttgaaagagctttg
gtcttcatgcataaaatgcctcgaatttggttagattattgtgaatttttaatgaatcaa
tgtcagattactaaaacacgtcatgtatttgatcgagctctccgtgctcttccaattaca
caacatcacaggatatggcctctatacttaaagtttgtttcggaaaaaggaatacctgag
acagctgttagagtctacagacgttatttaaagttatgcaatgaagatgcagaggattat
atagaatatttgaaacaaattgataggcttgatgaagctgctgtaaagttggcagaaatt
gttaatgatgaaaaatttgtatcaaaacatggaaagtcaaaacatcagctgtggaatgag
ctatgtgaactaatttcagagaatccagacaaagtgcgatctcttaatgttgatgctata
atacttgatggcttacgacgatttactgatcaagttggccatttctggaattgcttggct
gattattatattagaagtggattatttgatcgggcaagggatatatatgaagaggcaatt
aatacagttatgacagttcgagattttactcaagtttttgatgcatattcacagtgcgaa
gaaagtttgatcaaagcaaaaattgaattagttcagaaaggaaattcaacagaggaagat
acccttgaactagatttaagactcgcgtggttcgattatttactggaaagaagacctctc
ttattaaatagtgtcttgttgaggcaaaatccacataacgtacatgaatggcatcggcgc
atcaaacttctggaaggaaaacccaaagagattgtgagtacttatacagaagctgtgcaa
aaagtggatcctaaattagcttgtgggaaactgcacacattatgggttgcatttactaaa
ttttatgaaagccataagcaacttaatgacgcaagaataatatttgagaaggcagtccaa
gttccttatacagaagttgatgatttagctactgtgtggtgcgaatgggcagaaatggaa
attcgtcataacaatcttgaaagggcactgaaacttgtgcaaagggctactgctcttcct
gtaagcaaaggatcctatcatgatcagtctttgccagttcaagaaaggctctataagtca
ttgaaagtctggttgttatatgctgatttggaagaagtgttaggaacttttaagtctatt
aaagctgtatatgatcggataattgatttaagaattgccacaccacaagtaattatcaat
tatggattatttctggaggagaataaatattttgaagaagcttttaaagcttacgaaaaa
ggaatctctcttttcaaatggcctaatgtttatgatatttggaatacatatttagtgaaa
ttcttgaagcgatatggtggtactaagcttgaaagaacaagagatttatttgaacaatgc
cttgaacactgtccacgcaaatatgctaagtctatttatttactttatgcaaagctagaa
gaagaacacggtttagcaaggcatgccatggcagtatatgaaagagcaacaaaagcagtg
ctacctgaagaacaatttgagatgttcaatgtctatttgaaaaaagctgctgagatttat
ggagttacttacactcgtcaaatctatgagcaagccattgaggtgctgtctgacaatgaa
gcaaagcaaatgtgcctaaaatttgctgatctggaaaggaaattaggtgaaattgaccga
gctcgtgcaatttatgctcactgcagtcagatgtgtgatccaaggacaaatgtagatttt
tgggatttatggaaagaatttgaagttcgacatggaaatgaagatactatgagagagatg
ctgagaatcagaaggagtgttcaagcttcagttaatactcaggtcaactttatgtcagca
cagatgctgagtgctgctgtagctgcatctgatggtcttacagatactggaaaagatagc
atgcaacgtttagaagcacaagctaaggtcttggctacagaagctgctagagatcaacca
attaatagaaacaaagttgcatttgtcagaggagaagtaacagaacctgaaaaagaaata
agtaaagctgaagtgtataactcagatgaaattaacctggatgatgtagaatctgatgat
gaaattaaaattgatgaaatacaactagaagaaagaggtgtgcctgatgaagtatttgga
caattaaaaaaagactga
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