Stegodyphus dumicola: 118201150
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Entry
118201150 CDS
T07385
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
sdm
Stegodyphus dumicola
Pathway
sdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118201150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdm03041
]
118201150
Enzymes [BR:
sdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118201150
Spliceosome [BR:
sdm03041
]
Complex C
Other components
Step II factors
118201150
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
T2SSE
SRP54
Microtub_bd
AAA_7
cobW
Motif
Other DBs
NCBI-GeneID:
118201150
NCBI-ProteinID:
XP_035229076
LinkDB
All DBs
Position
Unknown
AA seq
1186 aa
AA seq
DB search
MNSEISSSLHRLEGITNQKGGLIIKKKTSDDNLFKIPAPKKSLLGLDVLAEQRRKEKILD
EKEKSEQKSSVRQNDDYDIENREECKRRKYRSSKDETPTYTGGVNEEYLKRVHGRQKREK
ERGLYVSSKHKRHKDDKEYENGRERNRRRRSRSHESERSYRSDSHSSSRRSEATYRDEPP
SPRIHPRDSPSRSGWDEDDITPSYKSTWDQPSPRRSPDRRSERSQYSKSHRTSESPDPTP
AYRYNDWVRDRKRSGATPQVSNVKDEKIPWSSEEEKEEWEEEIKRLDREWYSIDEGYDDN
HNPFAGMSAEYTKKKEEALEQKKKKRMSAQQRQIHKDNEKWETNRMLTSGVVQKLEYDED
FEEDNEARVHLLVQNVVPPFLDGRIVFTKQPEPIVPVKDPTSDMAMIARKGSLAVRTFRE
QKERRKAQKKEWELAGTRLGDIMGIKKVDEKEEKNVEDATDYKEEHKFAEHMKKTTEASS
DFSRKKSIIQQRQYLPVFAVRQELLNVIRDNSVIIIVGETGSGKTTQLTQYLHEDGYSKY
GMIGCTQPRRVAAMSVAKRVSDEMNVQLGEEVGYAIRFEDCTSEKTIIKYMTDGILLRES
LRESDLDNYSAIIMDEAHERSLSTDVLFGLLREVVARRQDLKLIVTSATMDASKFANFFG
NVPSFVIPGRTFPVELFFSKNPIEDYVDSAVKQVLQIHLQQTIGDILVFMPGQEDIEVTC
ELIAERLGEIENAPQLAILPIYSQLPSDLQAKIFQKAPDGVRKCVVATNIAETSLTVDGI
MFVVDSGYCKLKVYNPRIGMDALQIYPISQANANQRSGRAGRTGPGHCFRLYTESQYKNE
MLMTTVPEIQRTNLANVVLLLKSLGVQNLLQFHFMDPPPQDNMLNSMYQLWILGALDNIG
NLTSLGRSMIEFPLDPPLSKMLIVSCDMKCSSEILIIVSMLSVPAIFYRPKGREEESDLA
REKFQVPESDHLTFLNVYLQWKQHNFSSSWCNEHFIHVKAMRKVREVRQQLKEIMVQQKL
PVVSCGTEWDVVRKCICSAYFHQAAKLKGIGEYVNCRTGMPCHLHPTSALFGMGYTPDYI
VYHELVMTSKEYMQCVTAVDGHWLAELGPMFYSIKESAHSRMENRKLAKMSQNQMEEEMA
SAEKELQLKKKREEEITSSSRKKLQIFTPGRTDPSTPRRKPDRFGL
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtgaaatatcatctagtctacatagattagaaggaattactaatcaaaaaggt
ggacttattataaagaagaaaacaagtgatgacaatttattcaaaattcctgctccaaaa
aagtctttactaggtttagatgtgcttgctgagcagcgaaggaaagagaaaattcttgat
gaaaaagaaaaatctgaacaaaagtcatctgtcagacaaaatgatgattatgatattgaa
aatagagaagaatgcaaaagaagaaaatatagatcatcaaaggacgaaactccaacatat
acaggtggagtaaatgaggagtatttaaagagagtgcatggtcgacaaaaacgggaaaaa
gagcgtggtttatatgtatcatcaaaacataaacgtcataaagatgataaggaatatgag
aacggtagagaacgcaatcgcagacgacgtagtcgtagtcatgaatcagagagatcttac
agatctgattctcatagttcttcaagaaggtctgaagctacttacagagatgaacctcct
tctcccagaatacatccaagagattcaccatcacgatctggatgggatgaagatgatata
acaccaagttataaatcaacttgggatcagccttcccccagacgctctcctgacaggcga
agtgagaggagccagtatagtaaaagccatagaacatcagaatctccggatccaactcct
gcatatagatataatgactgggttcgagatcgaaagcgatctggggcaacacctcaggtt
tccaatgtgaaagatgagaaaataccttggtcgtctgaagaagaaaaggaagaatgggaa
gaagaaattaaaagacttgatagagaatggtattccatagatgaagggtatgatgacaat
cataatccatttgcaggcatgtctgctgaatatactaagaagaaggaggaagctctggaa
caaaaaaagaagaaacgtatgtctgctcaacaaaggcaaatacataaggacaatgaaaaa
tgggaaacaaatagaatgttgaccagtggtgttgttcagaagttagaatatgatgaagat
tttgaagaagataatgaagcccgtgtacatcttcttgtgcagaacgtagtgcctccgttc
ttagatggcagaattgtatttactaagcaaccagagcctatagttccagttaaagatcca
acatcagatatggccatgattgctcgcaaaggaagtctggctgtacggacatttcgagaa
cagaaagaaagaaggaaagcccaaaagaaagaatgggaactagcaggaactagattaggt
gacatcatgggtattaaaaaagtggatgagaaagaagaaaaaaatgttgaagatgctact
gattacaaagaagagcataaatttgctgaacatatgaaaaaaacaactgaagctagtagt
gatttttctaggaaaaagtctataattcaacagagacagtacttgccagtctttgcagtc
agacaagaattgttaaatgttattagagataacagtgttatcattattgttggagaaact
ggatcaggtaaaacaacacaattaactcaatatttgcatgaagatggatatagtaaatat
ggaatgataggatgtacacaaccgaggagagtagcagctatgtccgttgcaaaacgtgtt
tccgatgaaatgaatgtacaactgggagaagaagttggatatgcaattcgatttgaagat
tgtaccagtgagaagactatcattaaatatatgacagatggtattcttttaagggaatct
ttaagggagtcggatttagataattatagtgccattatcatggatgaagctcatgagcgt
tcactcagcacagatgtattgtttggtttactgagagaggtagtagcacggagacaagat
ctgaaattaattgtaacatctgcaacaatggatgcttctaaatttgccaacttttttggc
aatgttccatcatttgtaataccaggaagaacttttcctgttgagttattctttagtaaa
aatccaatcgaagattatgtagattcagctgtaaagcaagtgttgcagattcatttacag
caaacaattggcgatattctggttttcatgcctggacaagaggatattgaggtaacttgt
gaacttattgctgaaaggctgggtgaaattgaaaatgcaccacaacttgcaatactgcct
atttattctcagctacccagtgatttgcaagcaaaaattttccaaaaagcaccagatggt
gttcgaaaatgtgtagtggcaacaaatattgctgaaacatcattgactgttgatggtata
atgtttgttgttgatagtggatattgtaagcttaaagtatacaatccaagaattggtatg
gatgctttgcagatataccctattagtcaagctaatgcaaatcagagatcaggaagggct
ggtagaactgggcctggtcattgttttcgcttgtatacagaaagtcagtacaaaaatgag
atgttaatgacaactgtgccagaaatacagagaacgaacttagccaatgtggtgctgctt
ttaaaatctttgggtgttcagaatttattacaatttcatttcatggatcctcctccccaa
gacaatatgctaaattctatgtatcagctatggatacttggagcattagacaatatagga
aatttgacttcattaggtcgaagcatgattgaatttcctcttgatcctcctttgtctaaa
atgttgatagtatcctgtgatatgaaatgtagttctgaaattctaattattgtttcaatg
ttatctgtgcctgccatattttatcgacctaaaggacgagaagaagaaagtgatctagcc
cgtgaaaaatttcaggtgcctgagagtgatcatcttacgtttttaaatgtttatttgcaa
tggaagcaacataatttttcgtcttcatggtgtaatgaacattttattcatgtaaaagcg
atgaggaaagttcgtgaagtgcgacaacagttaaaagaaataatggtgcaacaaaaactt
cctgttgtgtcatgtggaacagaatgggatgtagtccgtaaatgtatctgttctgcatat
tttcatcaggcagcaaagcttaaaggtattggagagtatgttaattgtcgaacaggaatg
ccatgtcatttgcatccaaccagtgcacttttcggcatgggttacacacctgattacatt
gtgtatcatgaacttgtaatgacaagtaaagaatatatgcaatgtgtaactgctgtggat
ggtcattggcttgcagagttaggaccaatgttttacagtattaaagagtcagctcactct
cgtatggaaaatcgaaaactagcaaagatgagccaaaaccagatggaagaagaaatggct
tctgctgagaaagaacttcaattaaagaaaaagcgtgaagaagaaattacatcatcatct
cgtaagaaactccaaatttttacacctggaagaactgatccaagtacacctagacgaaag
cctgatagatttggtctgtag
DBGET
integrated database retrieval system
