Stegodyphus dumicola: 118201253
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Entry
118201253 CDS
T07385
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sdm
Stegodyphus dumicola
Pathway
sdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118201253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdm03019
]
118201253
Enzymes [BR:
sdm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
118201253
Messenger RNA biogenesis [BR:
sdm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118201253
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
TIMP
Reb1_MybAD
Motif
Other DBs
NCBI-GeneID:
118201253
NCBI-ProteinID:
XP_035229206
LinkDB
All DBs
Position
Unknown
AA seq
408 aa
AA seq
DB search
MKARASSFIICQIGLSIFTKEKDQNIYSIETYVFYVRPTFCGSCDKRFVCQASSINFLCA
HGFDFNKFFKDGIPYINEAEEQEFCKELEDGSATRPHEKAMDIRQKRKQDMLINELLNSE
SRHSTENCEYQKNKRKLILPKDKISHEYFQVNELRCKYPSLWAYCENDSVIVEKVGLEEK
KKLEQTVVKEKIKLLEYFLGFTRIFRLMKESKKPIVGHNLFMDLLLIFDHFHRPLPKTYK
EFKKELHDVFSVVYDTRHIWRHVKKFYNFKEIPTQCGLFDLYEMFKSPSDVLTTLYSPTV
RHCNGEKYLTEEFPHESGYDSFVTGWVFLKICHLLAMKKIQSSIFIKPQTLKQHLSAVEP
FVNKLNLGRSRVDYINLDGEDPIPNVPEFLHVRVKNKELVLTHYEVSI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaggctagagcttcaagttttattatttgccaaattggtttgtcaatttttaccaag
gagaaggaccaaaatatttattcaatagaaacatatgtattttatgtccgaccaactttt
tgtggcagttgtgataaaagatttgtatgtcaggcctcaagtataaattttttgtgtgct
catggctttgatttcaataagttttttaaagatggcattccgtatattaatgaagctgaa
gaacaggaattttgcaaagagcttgaagatggcagtgctacacgtcctcatgaaaaagcg
atggatatcaggcagaaaagaaagcaagatatgttgatcaatgagctgctaaattctgaa
tcaaggcattcaactgaaaactgtgaatatcagaaaaacaaaaggaaattaattttgcca
aaagacaaaatttcccatgaatattttcaagtcaatgaactgagatgcaaatatccatca
ttatgggcttattgtgagaatgattctgttattgttgaaaaagttggcctagaagaaaag
aaaaaattagaacaaactgttgttaaagaaaagattaaacttttagaatatttccttggc
ttcacaagaatttttaggttaatgaaagagtctaaaaagcctattgttggtcataatctt
tttatggatctactgttgatttttgaccactttcacagaccgcttccaaaaacatacaaa
gaatttaaaaaagagctacatgatgtgttttctgttgtgtatgatactaggcatatatgg
agacacgtaaagaagttctacaattttaaagaaattccaacacagtgtggactttttgat
ttatatgaaatgtttaaaagcccttctgatgtactcacaactttatattcccccactgtg
cgtcactgcaatggtgaaaaatatctgactgaagaattccctcatgaatctggttatgat
tcatttgttacaggatgggtatttttaaaaatctgtcatctcttagctatgaaaaaaata
caaagttcaatttttattaaaccacaaactttgaagcaacatcttagcgctgttgaacct
tttgtaaataaactaaaccttggtagatcaagagtggattatattaatttggatggtgaa
gatcctatacctaatgtgcctgaatttttgcatgttcgagtaaaaaataaagaacttgtt
ttaactcattatgaagtaagtatataa
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