Stegodyphus dumicola: 118201561
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Entry
118201561 CDS
T07385
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1-like
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
sdm
Stegodyphus dumicola
Pathway
sdm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118201561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdm03021
]
118201561
03019 Messenger RNA biogenesis [BR:
sdm03019
]
118201561
Transcription machinery [BR:
sdm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118201561
Messenger RNA biogenesis [BR:
sdm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118201561
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
118201561
NCBI-ProteinID:
XP_035229568
LinkDB
All DBs
Position
Unknown
AA seq
1180 aa
AA seq
DB search
MYFMFPYYFSRVAVRQDTCCILALSLNINQKVHPVIWSLSGLPFDCLYAMAVPKPIGGVL
LVAVNALLYLNQSVPPYGISLNSFTDFSTSFPLKPQEGVKLSLDCSSAAFISYDKLVISL
KGGELYVLTLFNDGMRSVRGFNFDRAASSVITTCMCICEEGYLFLGSRLGNSLLLRYTEK
VDMKDSAEQSTNSIKDARSNTEEKQNDETSEEPSAKKIRLDSMDDWMASDVALIEDPEEL
EVYGNLTQTTKQLTSYTFEVCDSLLNIGPCGKICMGEPAFISEEFSANPDPDLELVTTSG
YGKNGALSVLQRSIRPQVVTTFELPGCVDMWTVIGHNTDLEKLEERTEEDKEDSSEENQN
KASQILKNSHAFLILSRVDSTMILQTGQEINELDHSGFSTQAPTIFAGNLGNNRFIVQVS
QMGVRLLYGSRQVQHIPLDAGSPVVWASVADPYVVIMSAEGLVIQLMLRVDDFGSSARLA
VSRPQLAQVKSRVSTLCVYKDVSGIFTTIPKQEPDEAVPLSHPVAPAVSINDVIKMNPEA
VDDEDALLYGEPIVHTERPLDEYKVPSKKTRRKIEVKDVKPTFWLFIVRENGVLEVYSLP
NYKLCYLVKNFPMGQKYLVDSGQATSTLPGMTSDKVSEKQHEALPIIHEILVVGLGIRSS
RPMLLARADEDLLIYEAFPFYETQIDNHLKLRFRKLNHDIITRERKLFKAKKTEEEEQTS
SYKRWLRYFVDISGYSGVFVCGICPHWLFLTVHGELRVHPMTIDGAVTCFAPFHNVNCPK
GFLYFNKQGELRICVLPTHLNYDAPWPVRKVPLRCTPHFINYHPETKTYCIITSNMETCT
RLVRFNGDEKEFEAIERTDERYIYPMVEKFTMQLFSPVSWEMIPNTLMELEEWEHVTCVK
NVMLMSEGTRSGLKGYLAVGTSYTYGEDVTSRGRILILDIIDVVPEPGQPLTKNKIKLVY
SKEQKGPITAICQVSGFLLSAIGQKIYIWQLKDNDLIGVAFIDTHIYIHSAISLKNLIIV
ADVYKSISLLRYQENSRTLSLVSRDVKPLEVYGIEFLIDNSQVGFLVSDVEKNLVLFMYC
PEARESFGGSKLLRKADIHIGYHINTFFRIRCRLGEIANYDRRQASILEKRHVTMFATLD
GGLGYVIPIPEKTYRRLLMLQNVLVTHIPHTAGLNPKGFR
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgtattttatgtttccttactattttagccgagtcgcagtacggcaggacacttgttgc
attttggcattatccttgaacataaatcaaaaagtccatccggtaatctggtcacttagt
ggcttaccatttgattgtctatatgcaatggcagtacctaaacctattggaggggttctt
ttggttgctgtaaatgctttactttacctcaaccaaagtgttccaccatatgggatttcc
ttaaatagtttcacagattttagtacatcatttcctttaaaaccacaagaaggtgttaag
ttgtcattagattgctcatctgcggcatttatttcttatgataaattagtgatatcttta
aagggaggagaattgtatgttttaacgctatttaatgatggtatgagaagtgttagaggt
tttaattttgatcgagcagcttctagtgtcatcacgacgtgtatgtgtatttgtgaagaa
ggttatttatttcttggctcgcgtttgggcaattctctgttgctacgctacactgagaaa
gtcgatatgaaagatagtgctgagcaaagtacaaattcaattaaagatgcaaggtcaaat
acagaagagaaacaaaatgatgagacatccgaagaaccatctgctaaaaagattcgattg
gacagtatggatgattggatggcttctgatgttgcactcattgaagatcctgaggagtta
gaagtatatggaaacctgactcaaactacaaaacaactaacatcttatacatttgaagtt
tgtgatagcttattgaatattggtccttgtggcaaaatatgtatgggagaaccagctttc
atatctgaagaattttctgcaaatccagatcctgatctggaacttgttactacatctgga
tatggaaaaaatggtgccttgtctgttttacagcgttccattagacctcaagttgtgact
acgtttgaattgcctggttgtgtagacatgtggacagttattgggcataatacagattta
gagaagttggaagaaaggacagaagaggacaaggaagactccagtgaagagaatcaaaat
aaagcctctcagattctgaagaattctcatgcatttcttattctgagtagagttgatagc
acaatgatacttcagactggacaagaaataaatgaactcgaccatagtggttttagcaca
caagcgcctacgatatttgccggcaatcttggaaacaatcgttttatcgttcaggtttct
cagatgggtgttcgtcttttgtatggttcccgtcaagtgcagcacatacctttagatgct
ggatcacctgttgtgtgggcatctgtggcagatccatatgttgttatcatgagtgcagaa
ggtttagtcatacagctgatgttaagagtagatgattttggcagcagtgctagacttgca
gtatccagaccacagctggctcaagtaaaatctcgggtttctacattatgtgtgtacaaa
gatgttagtgggatatttactactataccaaaacaagaacctgatgaagcagtgccattg
tcacatcctgttgctcctgctgttagcatcaatgatgttattaagatgaacccagaagct
gtggatgatgaagatgctttattatatggagagcctatagtgcatacagaaagaccattg
gatgagtataaagttccatcaaaaaagactagacgaaaaatagaggtgaaagatgtgaaa
cctactttctggttatttattgtccgagaaaatggagttctagaggtttatagtctacca
aattacaagctatgttatttagtaaagaactttccaatggggcaaaagtatttagttgac
agtggccaagctacttctactttgcctgggatgacttcagataaagtttcagagaaacag
cacgaagctctacccattattcatgaaatactagtagtaggcttaggcattcgttcttca
agacctatgcttttggcacgggcagatgaagatttattaatttatgaagcatttcccttc
tatgaaactcaaatagataatcatttaaaattaaggtttagaaagttgaatcatgatatc
attactcgtgaacgaaagttattcaaggctaagaaaacagaagaggaagaacagacatcc
agttacaaaagatggctgcgttattttgtagatatatctgggtacagcggtgtttttgtg
tgtggcatttgtccacactggttatttctgacagttcatggagaactgagggttcatccc
atgactattgatggagcagtcacatgctttgctccattccataatgtaaactgtcccaag
ggctttttgtatttcaataaacagggggaacttcgaatatgtgttcttccgactcacctc
aattacgatgccccatggcctgttcgtaaggtacctctgcgttgcactcctcatttcatc
aattaccatccagaaacaaaaacatattgtataattacaagtaacatggaaacctgcaca
agacttgtccgatttaatggagatgaaaaagaatttgaagctatagaaagaactgatgag
cgttacatctatcctatggtcgaaaaattcaccatgcagctgttttcacccgtcagctgg
gagatgataccaaacactttaatggagttggaagaatgggagcatgtaacatgtgtaaaa
aatgtgatgcttatgtctgaaggaactcgcagtggcttaaaaggttatttagcagtggga
acaagctacacatatggtgaagatgtaacaagtagaggccggattttgatcttggatata
attgatgttgttcctgaaccaggccagccactaacgaaaaataagatcaagctggtttac
agtaaagaacaaaaaggtcccatcactgctatatgccaagtttcaggcttccttttaagt
gcaattggtcaaaagatttatatttggcagctaaaagataatgatctgattggtgttgct
tttatagacacgcacatctatattcattctgctatttctttaaaaaatttaataattgtt
gctgatgtttataaatccatctcattactacgttatcaggaaaacagcagaacactatca
cttgtgagcagagatgtaaaaccattggaagtttatggcattgaattcctcatagataat
tctcaagttggtttcctagtgtctgatgttgagaaaaatttagttctcttcatgtactgc
cctgaagccagagaaagttttggcggatcaaagcttcttcgtaaagcagacattcacatc
ggatatcacattaacacattctttcgaattcgctgtcgtttgggtgagatagccaattac
gataggcgacaagcttccattctggaaaagagacatgttacaatgtttgcaacattagat
ggtggtctaggctatgtaatacccattccagagaaaacttatcgaaggctgctcatgttg
caaaatgtcttagttacgcacattccacacacggctggacttaatcctaaaggcttcagg
taa
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integrated database retrieval system
