Stegodyphus dumicola: 118201932
Help
Entry
118201932 CDS
T07385
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sdm
Stegodyphus dumicola
Pathway
sdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118201932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdm03019
]
118201932
03041 Spliceosome [BR:
sdm03041
]
118201932
03009 Ribosome biogenesis [BR:
sdm03009
]
118201932
03016 Transfer RNA biogenesis [BR:
sdm03016
]
118201932
Enzymes [BR:
sdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118201932
Messenger RNA biogenesis [BR:
sdm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
118201932
Spliceosome [BR:
sdm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118201932
Complex C
U4/U6.U5 tri-SnRNP related factors
118201932
Ribosome biogenesis [BR:
sdm03009
]
Eukaryotic type
Pre-60S particles
Helicases
118201932
Transfer RNA biogenesis [BR:
sdm03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
118201932
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
DBC1
ATPase_2
Motif
Other DBs
NCBI-GeneID:
118201932
NCBI-ProteinID:
XP_035229979
LinkDB
All DBs
Position
Unknown
AA seq
723 aa
AA seq
DB search
QDFLKEISEGKRTNEDEYEIDAKKLKVTNVLDDINPEEFSSRIQIHVVETVEACLHEVAV
PHDAEYIPLRQSQNPPSRKYPFILDPFQKEAILCLENNQSVLVSAHTSAGKTVVAEYAIA
MSLRDKQRVIYTTPIKALSNQKYREFYEEFKDVGLLTGDVTINPSASCLIMTTEILRSML
YRGSEVMREVGWVVFDEIHYMRDKERGVVWEETIILLPDSVHYVFLSATIPNARQFAEWI
CHLHHQPCHVVYTDYRPVPLQQYIFPAGGDGLHLVVDENGNFREENFNTAMNVLQVAGGA
AKGDSGMKGRKGGFKDGSNCYKIVKMIMERNFAPVIVFSFSKKECEAYAMQMAKLDFNSA
EEKPLVEEVFRNAMDVLSDEDKKLPQVEHVLPLLKRGIGIHHSGLLPILKETIEILFSEG
LIKALFATETFAMGLNMPARTVLFTNARKFDGKDFRWVTSGEYIQMSGRAGRRGLDERGI
VILMVDEKMSPSAGKEIVKGSPDPINSAFHLTYNMVLNLLRVDEINPEYMLERSFFQFQN
YSVIPQLYDKIKKLREEHDAIEIEREDEVDAYYKIKKQLATLSEEYHSYITQPEYCVPFF
QPGRLVKVQNGDDDFGWGIVINYQKKYLTAENKEESPVFYVVDVLLHVSKESSETKVTSN
LKPPPSGEKGIMQVVPIKLNLIQQLSSVRAYYPDDLRPVDNRMKVLKTIQVRQCICMHKS
FIH
NT seq
2173 nt
NT seq
+upstream
nt +downstream
nt
tcaagattttttgaaagaaatttctgaaggaaaaagaacaaatgaagatgaatatgaaat
tgatgcaaaaaaactgaaggtcactaatgttcttgatgatataaaccctgaggaattttc
atccagaattcaaatacatgttgttgaaacagtagaagcttgtctccatgaggttgcagt
tcctcatgatgctgaatatattccattgcgccaaagtcagaatccaccttctcgaaaata
tccctttatattggatccatttcagaaagaggcaattttatgtttggaaaataatcagtc
ggttcttgtgtcagcacatacttctgctggaaagacagtagttgcagagtatgctattgc
tatgtctttacgtgataagcaaagagtgatctataccacaccaatcaaagctctcagtaa
tcagaagtatcgtgaattttatgaggaattcaaagatgttggtttattgactggtgatgt
aactattaatccttcagctagctgtctaattatgaccacagaaattttacgaagtatgtt
atatagagggtcagaagtgatgagagaagtaggatgggttgtctttgatgaaatacatta
tatgagagacaaagagcgaggtgttgtgtgggaagaaacaattatacttcttcctgacag
tgtgcattatgtatttttatctgctaccattcctaatgctagacagtttgctgaatggat
ttgccatctccatcaccaaccttgccatgtagtatatactgattatagaccagtgccttt
gcaacagtacattttccctgctggtggtgatggcttacatttagttgtggatgaaaatgg
taattttcgtgaagaaaattttaatacagctatgaatgttttacaagttgctggtggtgc
agctaaaggagactcaggaatgaaaggccggaaagggggatttaaagatggttcaaattg
ctataaaattgtaaaaatgataatggaaaggaattttgcccctgtaatcgtgttcagttt
tagtaaaaaggaatgcgaggcatatgccatgcaaatggccaaactagacttcaacagtgc
tgaagaaaaaccattagtagaagaagtatttagaaatgcaatggacgtgttatctgatga
agacaaaaaattgcctcaggtcgaacatgtgctcccgcttttaaaacggggaattggaat
tcatcattctggtcttttacctattttaaaggaaacaattgaaatactcttttccgaagg
tttaataaaggcattgtttgcaacagaaacttttgctatgggattaaatatgccagccag
aacagtattatttactaatgcacgaaaatttgatggaaaagattttcgatgggtcacatc
tggtgaatacatccagatgagtggacgtgctggcagaagaggtcttgatgaaagaggtat
tgtcattttgatggttgatgaaaagatgagcccatctgcgggaaaagaaattgtaaaggg
ttcaccagatcctataaattcagccttccatttgacttataatatggtattgaatttgct
tcgagtagatgaaataaatcctgagtatatgcttgaacgttctttcttccaattccagaa
ttactcagttataccacaactgtatgacaaaattaaaaagctccgagaagagcatgatgc
tatagaaatagaacgagaagatgaagtcgatgcatattataaaataaaaaaacaattagc
tactttgtctgaagagtatcattcatatattacacagccagaatactgtgttcccttctt
ccagccaggacgtttagtgaaggtgcaaaatggagatgatgattttggttggggtattgt
aataaattaccaaaagaagtatctaacagctgaaaacaaagaggagtcacctgtctttta
tgtagttgatgttttgctgcatgtttccaaagaaagttctgaaacaaaagtaacttctaa
tttgaagccaccaccttcaggagaaaaaggcattatgcaggttgtgcctattaaattaaa
ccttattcaacagttaagttcagtacgtgcctattatccagacgacctcaggcccgtgga
taatcggatgaaagttcttaaaacaattcaggtaaggcaatgtatatgtatgcataaaag
ttttattcactaa
DBGET
integrated database retrieval system
