Stegodyphus dumicola: 118202136
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Entry
118202136 CDS
T07385
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
sdm
Stegodyphus dumicola
Pathway
sdm03015
mRNA surveillance pathway
sdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118202136
09123 Folding, sorting and degradation
03018 RNA degradation
118202136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdm03019
]
118202136
03041 Spliceosome [BR:
sdm03041
]
118202136
Messenger RNA biogenesis [BR:
sdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118202136
mRNA cycle factors
Stress granule specific factors
118202136
Spliceosome [BR:
sdm03041
]
Complex C
Other components
Complex C specific factors
118202136
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RBD_DEAH11
RRM_5
RRM_7
RRM_RdRP1_2
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
118202136
NCBI-ProteinID:
XP_035230180
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MNPSGPNYPIASLYVENLHADVTEAMLFEKFSTAGPVLSIRVCRDFITRRSLGCAYVNFQ
PPVDAERALDTMNFDTIRGRPIKIMWSQRDPSLRKSGVGNVFVKNLDKTIDNKVLYDTFS
AFGNILSCKVATDEESTSKGYGFVHFETEEAANNAIMKVNGLLLNGRKVFVGKFIPRKER
EKLFGEKAHHFMNVYIKNFGDDLDDVKLRELFEKYGKITSAKVMTDELGKSKGFGFVNFE
EPENAEKAVEDLNGKEFNGKTLHVGRAQKKSERAAELKQRFQLLKMERMNKYQGRNLYVK
NLDNAIDDECLRKEFAPFGTITSAKVMTHRNGHSKGFGFVCFSSAEEATKALSKMNGQIV
MSKPLYVALAQCKEERKAHLASQMARMRMQLGRMLNQCTNYFVPTIRQAQRSYFPQMDQM
RATYRWPTQPQMRPGGQPAAASQAMQFARAAARPVVAASQNPGMRAGMNARPITGQQPTA
VSGKRVAAMSPTGVGAARPTSIASANVNQRPATYKYTSNMHNPPQPQRVQQAVTQQAMHI
RGQEPLTASMLADANAQEQKQMLGERLFPVIHRWYPQKAEKITGMLLELDNSELLHMLEH
QELLNAKVEEAVALLAAHHAKEYISVAKRRKKLNPLVS
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgagtgggccaaattatcccatagcttctttatatgttgaaaatctacatgcg
gatgttacagaggctatgctttttgaaaaattttcgacagcaggaccagttctttccata
agagtttgcagagatttcattacacgtcgctcgcttgggtgtgcctatgttaattttcag
ccgcctgttgacgctgaaagggccttagacacaatgaactttgacaccatcagaggaagg
ccaattaaaatcatgtggtcacaacgagatccatctctaagaaaatcaggtgtaggtaat
gtcttcgtaaagaacctggacaaaactattgataacaaagtgctgtatgacacattctct
gcctttggaaatatcttatcatgtaaagtagcaactgatgaggagagcacttcaaaagga
tatggttttgttcattttgaaactgaagaagcagcaaataatgcgatcatgaaagttaat
ggcttgcttcttaatggaagaaaagtttttgttggaaaattcatcccccgtaaagagcgt
gagaagctctttggtgaaaaagctcaccacttcatgaatgtttatatcaagaactttggt
gatgatcttgatgatgtaaagctgagagagctgtttgagaagtatggaaaaataacaagt
gccaaggtaatgactgatgagcttggaaaatctaaaggctttggatttgtaaactttgaa
gaaccagagaatgctgaaaaggctgttgaagatctcaacggaaaagaattcaatggaaag
actttacatgttggtcgtgcacaaaagaaatcagaaagagcagcagaattgaaacaaaga
tttcagttgttgaaaatggaacgtatgaacaaataccagggtagaaatttatatgttaag
aatcttgataatgctattgatgatgaatgcttaagaaaagaatttgcaccgtttggaaca
ataactagtgctaaagtcatgacacatagaaatggacattccaagggatttggctttgtc
tgctttagctctgcagaagaagcaactaaagcattaagtaaaatgaatgggcaaattgtt
atgtctaaacctttgtatgttgctttagctcaatgcaaagaagagcgcaaagctcattta
gcttctcagatggccaggatgcgcatgcagttgggacggatgttaaaccaatgtaccaac
tattttgtaccaactatacgtcaagctcagcgaagttacttcccacaaatggatcaaatg
cgtgcaacttatcgatggcccactcagcctcagatgcgaccaggaggtcaaccagctgca
gcatcccaagctatgcagtttgctagagcagctgcacgtccagtagttgcagcttcgcaa
aatccaggaatgagagccggtatgaatgctcgacccataacaggccaacaacccactgct
gtatctggaaaaagagttgctgcaatgagtcctactggtgtaggtgccgcacgacctact
agcattgcttctgcaaatgtcaatcaaagaccagccacatacaaatatacttctaacatg
cataatccaccacagcctcaaagagttcaacaagctgtgactcagcaagccatgcatata
cgaggccaagaacctttaactgcttccatgttagcagatgccaatgctcaagagcagaag
caaatgctaggtgaacgattgtttcctgtaatacatcgctggtatcctcagaaggctgaa
aagatcactggaatgttgttggaattggataattctgaattgttgcatatgttagaacat
caagagttactgaatgctaaagttgaagaagctgttgctttacttgcagctcatcatgct
aaagaatatatatcagttgccaaaagaagaaagaagcttaaccctcttgtttcctga
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