Stegodyphus dumicola: 118202471
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Entry
118202471 CDS
T07385
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sdm
Stegodyphus dumicola
Pathway
sdm03013
Nucleocytoplasmic transport
sdm03015
mRNA surveillance pathway
sdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118202471
09122 Translation
03013 Nucleocytoplasmic transport
118202471
03015 mRNA surveillance pathway
118202471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdm03019
]
118202471
03041 Spliceosome [BR:
sdm03041
]
118202471
Enzymes [BR:
sdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118202471
Messenger RNA biogenesis [BR:
sdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118202471
Spliceosome [BR:
sdm03041
]
Complex C
Other components
EJC/TREX
118202471
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118202471
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
118202471
NCBI-ProteinID:
XP_035230547
LinkDB
All DBs
Position
Unknown
AA seq
423 aa
AA seq
DB search
MTENEAELLDYEDEDEQDQTAPDPAIETKKPAGGYVSIHSSGFRDFLLKPELLRAIVDCG
FEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQLDPVDNQVSVLVMCHTRE
LAFQISKEYERFSKYMPSIKVGVFFGGMTITNDEKVLKSNCPHIVVGTPGRILALVKSKK
LNLRHIKHFVLDECDKMLEALDMRRDVQEIFRSTPHEKQVMMFSATLSKDIRPVCKKFMQ
DPMEVYVDDEAKLTLHGLQQYYVKLKDNEKNRKLFELLDLLEFNQVVIFVRTVPRCMALA
QLLVEQNFPAIAIHRAMTQEDRLSRYQQFKDFHKRILVATNLFGRGMDIERVNIVFNYDM
PEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKTLNEVQERFDVNISELPEEIDISSYI
EGR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaaacgaggctgaactattggattacgaagatgaagatgaacaagatcagact
gcaccagatcctgcaattgaaaccaagaaaccagctggtggttatgtatcaatacacagc
tctggatttagagatttcttattaaagcctgagcttctgagagccatagttgactgtggt
ttcgaacatccttctgaagttcagcacgaatgcattccacaagctatacttggtatggac
atattgtgccaagcaaagtcaggtatggggaaaacagctgtctttgtactagcaacactg
cagcagctagatcctgttgacaatcaggtatctgttcttgttatgtgccatacgagagaa
ctggctttccagatttctaaggaatatgagcgcttctcgaaatacatgccttctatcaaa
gttggtgtgttttttggaggaatgacaattacaaatgatgaaaaagtattgaaatccaac
tgcccacatattgttgttggaactccaggtcgaatattagctttggtaaagtcaaagaaa
ctcaacttgcgacatatcaagcactttgttttagatgaatgtgacaaaatgctagaggct
ttggatatgcgtagggatgtgcaagaaatattccgaagtactcctcatgagaagcaagtg
atgatgttcagtgccactttaagcaaagatattcgacccgtgtgcaagaaattcatgcaa
gatcctatggaagtttatgttgacgatgaggctaagttaacactgcatggactacaacaa
tattacgtgaagctaaaagacaatgaaaaaaataggaaattgtttgaactccttgatctg
cttgaatttaatcaggtggtcatttttgtacgcactgtaccaagatgtatggctttggca
caacttcttgttgagcagaatttcccagcaattgcaattcatcgtgccatgacacaagaa
gataggctttcgagatatcagcagttcaaagatttccataagcgtattttggtagccaca
aatttatttggcagaggaatggacattgaaagagttaatatagtttttaactatgacatg
ccagaagactcagatacctatctccatagagttgcacgtgcaggacgatttggaactaaa
ggtcttgcgataacatttgtttcggatgaaacagatgctaaaactttaaatgaagtacaa
gaaagatttgatgtgaatatatctgaactaccagaagaaattgacatttcttcatatatt
gaaggacgttga
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