Shewanella denitrificans: Sden_0042
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Entry
Sden_0042 CDS
T00344
Name
(GenBank) type III secretion system inner membrane R protein
KO
K02421
flagellar biosynthesis protein FliR
Organism
sdn
Shewanella denitrificans
Pathway
sdn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sden_0042
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
sdn02044
]
Sden_0042
02035 Bacterial motility proteins [BR:
sdn02035
]
Sden_0042
Secretion system [BR:
sdn02044
]
Type III secretion system
Flagellar export apparatus
Sden_0042
Bacterial motility proteins [BR:
sdn02035
]
Flagellar system
Flagellar assembly proteins
Type-III secretion
Sden_0042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_export_1
Motif
Other DBs
NCBI-ProteinID:
ABE53339
UniProt:
Q12T87
LinkDB
All DBs
Position
54915..55700
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AA seq
261 aa
AA seq
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MPLRLLAKLLSFRDMEQYLKVLGLFYCRVGIVFWLPLVGPMSRIPTSIRFIIVNVIVIAL
FSLQGAPAVIEVDLNTRSYLTLLAIEFITGITFSLILAVPAVVLLFFGRAIDMQIGLGAS
GIFNPTSQTQDSLLGVLFSFAALTLFWSLGLHLDVLKILIESIKVLPLGQTRNVEAMVFI
EYFSTAFVLGLILFAPVIIMLFIVDICSGIISKSMPQMSIYFVIMPLKIMIGFIVLTITL
TNLASHFEMLVRFPVKFLVGL
NT seq
786 nt
NT seq
+upstream
nt +downstream
nt
atgccattacgactattagcaaaattgctgagttttagggatatggaacagtatttaaaa
gtacttggcctattttactgcagagttggtattgtgttttggttgcctttagttggccct
atgtccaggatacctactagcatccgctttatcatagttaatgtgatcgttatcgcgttg
ttttctctacagggagcgccagcagtcatagaggtagatttaaatacccgctcatatttg
accctgctggcaatcgagtttatcactggcattactttttctcttatattggcagtcccg
gccgtggtgttgcttttttttggtcgcgcgattgatatgcaaattggtctcggtgcttca
gggattttcaatccaacaagccaaactcaagattcgcttcttggggtgttattttcattt
gcagcattgacattattttggtctctgggcttgcatttggatgtacttaaaattctgata
gaaagtattaaagtactgcctcttggtcaaacgagaaatgtagaagcaatggtttttatt
gaatacttttctacagcattcgtacttggtttgatcctttttgcccccgtgatcattatg
ctttttattgtggatatttgttccgggatcatttctaaaagcatgccgcagatgagtatt
tattttgtcattatgccattgaaaataatgataggttttattgtcttgaccatcacgtta
acgaatttagcttcgcattttgaaatgctagttaggtttcctgttaaatttttggtaggg
ctttag
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