Shewanella denitrificans: Sden_0195
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Entry
Sden_0195 CDS
T00344
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sden_0195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdn03021
]
Sden_0195
03400 DNA repair and recombination proteins [BR:
sdn03400
]
Sden_0195
Enzymes [BR:
sdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sden_0195
Transcription machinery [BR:
sdn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sden_0195
DNA repair and recombination proteins [BR:
sdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sden_0195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ABE53492
UniProt:
Q12ST4
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All DBs
Position
208504..209493
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AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVNPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDILEILLNLKGLAVTIEGKDEAMLTLSKSGTGPVTAADITHDGD
VTIMNPDHVICHLTGNNDISMRIRVERGRGYVPASARAQTEDDDRPIGRLLVDASFSPVA
RIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVTEPE
QKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLVDDL
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgttacagaatttcttaaaccgcgactcgtcgacattgagcaggttaac
ccaacacgcgccaaagttacactagagccactcgaacgtggttttggccataccttaggt
aacgcgttgcgtcgcatcctattgtcgtctatgccaggctgcgcagttacagaagtcgaa
atcgacggtgtgctgcacgaatacagcagcaaggaaggcgtgcaagaagatatccttgag
atattgctcaatcttaaaggtttagcagtaacaatcgagggtaaagacgaggctatgctt
acgttaagcaagtccggcacaggccctgttactgccgcagacatcacacatgatggcgat
gttaccatcatgaatcctgatcatgttatctgtcatttaacaggtaacaatgatatcagc
atgcgtatccgcgttgagcgtggtcgcggttatgtgccagcatctgctcgtgcacagacc
gaagacgatgatcgcccaatcggccgcttgttggttgatgcttctttctcacccgttgct
cgcattgcatacaatgttgaagcggctcgtgttgaacagcgcactgacttagacaaactc
gttatcgatatgaccacaaacggtactatcgatcctgaggaagcaatacgtcgttctgca
acaattttagctgaacagctagatgcgtttgttgaattacgtgatgtgactgagccagag
cagaaagaagagaaaccggagtttgatccgattctgctgcgtcctgtcgacgatttagag
ctaactgtacgttcagccaactgcttgaaggctgaagcgattcattacatcggagatctt
gtacaacgaactgaagtggaattgcttaaaactcctaacctaggtaagaagtctcttact
gaaatcaaggatgttctagcgtctcgcggactttcattaggtatgcgtcttgaaaactgg
cctccagctagtttagtagacgacctataa
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