Shewanella denitrificans: Sden_0243
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Entry
Sden_0243 CDS
T00344
Name
(GenBank) RNA binding S1
KO
K06959
protein Tex
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09190 Not Included in Pathway or Brite
09192 Unclassified: genetic information processing
99973 Transcription
Sden_0243
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Tex_central_region
Tex_YqgF
Tex_N
HHH_3
HHH_9
S1
YqgF
HHH_7
S1_RRP5
RNase_II_C_S1
T2SSK
HHH_6
Motif
Other DBs
NCBI-ProteinID:
ABE53539
UniProt:
Q12SN7
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Position
276435..278834
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AA seq
799 aa
AA seq
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MHSTSQTIAQIIAQELNVREQQVMATIALLDEGSTVPFIARYRKEATGGLDDTQLRNLYS
RLGYLRELNDRRQVVLSSIKAQDKLTPALEHEINQADSKTRLEDLYLPFKPKRRTKGMIA
IEAGLEPLADFLLANRNADIDAKAAEFINSAAGFSDEKAVLEGARYILMERFAEDAELIR
KVRSHLAQHAVLESKVMKGKEKEGSKFRDYFEHTEALHKVPSHRALAMLRGRNESMLSLS
MNADPDTQAIDGSYCEVIIADHFNLKLSDTSVDAWLKTVVTATWRIKIALQMENEMISQM
RERAEEEAIKVFARNLGDLLMAPPAGAKATMGLDPGLRTGVKVAIVDNTGKFVAHTVIYP
HAPQNVWDKSIRTLANLVNMHKVELIAIGNGTASRETDKLAGEVIASLKDTHPNLTKIMV
SEAGASVYSASELAAEEFPNLDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVS
QSQLSSSLDAVIEDCVNGVGVDLNMASAPLLAQVAGLNKTLAKNLVDYRDEHGQFTNRKQ
LLKVARLGPKAFEQAAGFLRIRGGDNPLDASSVHPEAYKLVETIAQKTQQAIDSLIGNSG
LLSSIKAEDFVSDEFGLPTINDILAELDKPGRDPRGEFKTASFKEGVEELKDLKPEMILE
GVVTNVTNFGAFVDVGVHQDGLVHISSLTDKFVSDPHTIVKAGDVVKVKVMEVDIERRRI
GLSMRLDEAINTSASSVKPKQDNRGSAANKTSTNTGITNKGASANNGKPTGRKAPAPKAA
PANAAMGNAFADAFAKMKK
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgcattctacatctcagactattgcccagatcatcgctcaggaactcaatgtccgtgag
caacaagtgatggcgactattgccttgctagacgaaggctcgaccgttccttttatcgcg
cgctatcgtaaagaggccaccggcggcttagatgatactcagctgcgtaacttatacagc
cgtttaggatatttgcgcgagcttaatgatcgccgtcaagtggtgctgtcgagtattaaa
gctcaagataagctcaccccagccttagagcatgagataaatcaggcggacagtaaaacc
cgcctcgaagacttgtatttaccctttaaaccaaagcgccgtaccaagggcatgattgcc
atcgaagctgggctggagcctttggcggattttctgctggctaatcgcaatgcagatatc
gacgcaaaagccgctgaatttattaattctgctgcgggctttagcgatgagaaagctgtg
ctcgaaggcgcacgttatatcttgatggaacgcttcgccgaagatgctgaacttattcgc
aaagtacgtagtcaccttgcccagcatgcggtgctggaaagtaaggtgatgaaaggcaaa
gaaaaagaagggtcaaaattccgcgattattttgagcatacagaagcccttcataaggtg
ccctctcaccgtgcgctcgccatgctacgtggccgcaatgaaagcatgttaagtttatcg
atgaatgccgaccctgatactcaggctatcgatggcagttattgcgaggtgattatcgcc
gatcatttcaacttgaagttgagcgatactagtgtcgatgcttggcttaaaactgtggtg
actgcgacttggcgcatcaagattgcgctgcaaatggaaaatgaaatgatttcccagatg
cgtgagcgcgccgaagaagaagccattaaagtcttcgcccgtaatcttggcgatctattg
atggcgccacctgcaggggcgaaagccaccatgggactagatcctggccttagaaccgga
gtcaaagtcgcgatagtggataacacaggtaaatttgtggctcatactgtgatttacccc
catgcgccgcaaaatgtgtgggacaaatccattcgcaccttggctaatcttgtgaatatg
cacaaggttgagcttattgccataggtaacggcacagcatcacgggaaactgataagttg
gcaggcgaagtcatcgcaagccttaaagacacccacccaaatctaactaaaattatggtc
agcgaagcgggcgcctctgtgtattcggcctccgagcttgcggctgaagaattccctaac
ttagatgtgtctattcgcggcgccgtgtctattgctcgccgcctgcaagacccgcttgcc
gagttggtcaaaattgagcctaagtctattggtgtgggtcaatatcagcacgatgtgagt
cagagtcagttgtcatcatccttggatgcggtgatcgaagactgcgtgaacggcgtcggt
gtggatctcaatatggcctcggcgccattgctggcacaggttgcgggcttaaataaaacc
ttggcgaagaatctcgtagattaccgtgatgagcacggccaatttactaaccgtaagcaa
ctgctcaaagtggcacgcctcgggcctaaagcctttgagcaggcggcaggcttcttgcgt
attcgcgggggtgataaccccttagatgcctcatcagtccatcctgaagcgtataaatta
gtggaaaccatagcccaaaagacccagcaagccatagacagcctgattggcaatagcggt
ttactgtctagtatcaaagccgaagattttgtcagcgatgaatttggtttgccgaccatc
aatgacatcttggccgagcttgataaaccagggcgcgaccctcgcggcgagtttaagact
gcaagctttaaagagggtgttgaagagctgaaggacttaaagcctgagatgattttagaa
ggtgtggtcactaatgtgactaactttggtgcttttgttgatgtgggtgtacatcaagac
ggtttagtgcatatttcatccttaactgacaaatttgttagcgatccgcacactatagtc
aaagctggcgatgtggttaaagttaaagtgatggaagtggacattgagcgccgccgtatt
ggcctaagcatgcgtctggatgaggccattaataccagcgctagcagcgtgaagcctaag
caagataatcgtggcagtgctgcgaataaaacgagcactaacacaggcattaccaacaaa
ggtgcgagcgctaataacgggaaacctaccggcagaaaagcgcctgcgcccaaagcggcc
cctgctaacgcagctatgggcaacgccttcgctgatgcctttgcaaaaatgaagaaataa
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