KEGG   Shewanella denitrificans: Sden_0447
Entry
Sden_0447         CDS       T00344                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
sdn  Shewanella denitrificans
Pathway
sdn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sdn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sden_0447
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sdn03021]
    Sden_0447
   03019 Messenger RNA biogenesis [BR:sdn03019]
    Sden_0447
Transcription machinery [BR:sdn03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Sden_0447
Messenger RNA biogenesis [BR:sdn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Sden_0447
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 NACHT AAA AAA_25 S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: ABE53739
UniProt: Q12S37
LinkDB
Position
complement(517684..518949)
AA seq 421 aa
MNLTELKDTPISDLVSLAETMKLENMARTRKQDIIFSILKAHAKSGEDIFGGGVLEILQD
GFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDSIFGKIRPPKEGERYFALLKVSEVN
FDKPESSKNKILFENLTPLHAEERLRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPP
KAGKTLLLQNIAQSITYNNPDVVLIVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTTEELQKMWILRKILHPMDEVAAMEFLIDKLAMTKTNDEFFTAMKRAK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatttaactgaattaaaagacacccctatttctgacttagtttccttagccgaaaca
atgaaattggaaaatatggcccgtactcgtaaacaggacattattttctcaattcttaaa
gcccacgccaaaagcggtgaagatatttttggtggcggtgtacttgaaatcctgcaagac
ggctttggttttttacgcagttccgatggctcatacttggcaggtcctgatgacatttat
gtctcaccaagccaaattcgtcgtttcaacatgcgtaccggcgatagcatattcggtaag
atccgtccgcctaaagaaggcgagagatatttcgcgctgcttaaagttagcgaagtcaat
ttcgacaaaccagaaagctcaaagaataaaatcctgtttgaaaacttaaccccgttacat
gcagaagaacgtctgcgtatggaacgtggtaacggttcaacagaagacattaccgcccgc
atcctagatttatgctcgccaattggtaaaggccaacgtggtcttatcgttgcgccgcca
aaggcaggtaaaaccctattactgcaaaacatcgcccaaagcattacctacaacaaccct
gatgtggtgttaattgtattgctcatcgatgaacgtcctgaagaagtgaccgagatgcag
cgcctagtgaaaggcgaagtgattgcatcaaccttcgatgagcctgctagccgtcacgta
caagtggctgaaatggtcattgaaaaagccaagcgcttggttgagcacaagaaagacgtg
gttatcttacttgactctattacccgtctggcccgtgcctacaacacagtgatcccttca
tcgggtaaagtgttaaccggtggtgtggatgccaacgccctgcacagaccaaagcgattc
tttggtgcagctcgtaatatcgagcacggcggcagcttaaccattatcgccaccgctctg
gtagataccggttctaagatggatgaagtgatttacgaagaatttaaaggtacaggtaac
caagagttacacctttctcgtaaagccgctgaaaagcgcgtcttcccagcgattgacttc
aatcgctctggtactcgtcgtgaagagaagctgactacgactgaagaactacagaagatg
tggattttgcgtaaaattcttcaccctatggatgaagttgccgcaatggaattccttatc
gacaaattggccatgaccaagactaacgatgaattctttaccgcgatgaaacgcgccaag
tcttaa

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