KEGG   Shewanella denitrificans: Sden_0474
Entry
Sden_0474         CDS       T00344                                 
Name
(GenBank) colicin V processing peptidase. Cysteine peptidase. MEROPS family C39
  KO
K13409  ATP-binding cassette, subfamily B, bacterial CvaB/MchF/RaxB
Organism
sdn  Shewanella denitrificans
Pathway
sdn02010  ABC transporters
Brite
KEGG Orthology (KO) [BR:sdn00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    Sden_0474
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:sdn01002]
    Sden_0474
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:sdn02000]
    Sden_0474
   02044 Secretion system [BR:sdn02044]
    Sden_0474
Peptidases and inhibitors [BR:sdn01002]
 Cysteine peptidases
  Family C39
   Sden_0474
Transporters [BR:sdn02000]
 ABC transporters, eukaryotic type
  ABCB (MDR/TAP) subfamily
   ABCB-BAC subgroup
    Sden_0474
Secretion system [BR:sdn02044]
 Type I secretion system
  RaxAB-RaxC type I secretion system protein
   Sden_0474
SSDB
Motif
Pfam: ABC_membrane Peptidase_C39 ABC_tran SMC_N Peptidase_C70 AAA_29 Peptidase_C39_2 AAA_22 T2SSE AAA_21 FtsK_SpoIIIE AAA_14 AAA_16 AAA_18 GspA_C39-like AAA_23 Guanylate_cyc_2 NTPase_1 NACHT MobB DUF4768 cobW DUF6594 ACTMAP-like_C
Other DBs
NCBI-ProteinID: ABE53766
UniProt: Q12S10
LinkDB
Position
complement(544986..547073)
AA seq 695 aa
MFALFPQKKCPFIFQSENSECGLACLAMISSFYQRKTDLMTLRKQLGYSESGMSVRTLCE
YAEQINLDSRPLQVDVHEIDQLRLPCVLHWDLNHFVVLTQCSKKSVTIHDPAIGKVTYSI
EKFKQHYTGIAVELFPAINFKKENRDTGLKLSPFWQASVGLKAGLFKIFIASVLLQLFSL
ASPYYMQLVIDDVIVNQDSELLTLLFIAFSMLALVSLVTSILRDLIGLHIQNHLNIQWSS
GLFSHLVRLPISWFEKRHIGDIVSRFGSQGEIQSFITSTFVSVVLDGLMVTTTLIMMYIY
SPKLTIIAIIAVLIYACLRWIFYRPFRRNAEEVITASAKEDSFFLEGIRSIQAIRLHGHE
DKRKNEWLSLHSNVVNLGIKGSLWSLGFSSVNTIVFAIENMCVIYFAANFVMEGVFSIGM
MMAFMSYKGQFSSRINSLIDSFVSFKMLDIHLSRLSDIALEPQEAHRKGLGLAENIVGCI
TLENISFRYGLKSKILFDNVNLTLKFGDNIAITGVSGSGKTTLLKIILGLLEPTSGRILF
DGVDIKKIGLVQYRKLIGSVMQNDSLLSGTLADNISFFDEAYNPLKIEQSCKLASIHDDI
EALPMGYQTLIGDMGVQLSGGQVQRVLLARALYLEPCVLVLDEATSNLDIDNEQRINSGI
SSLPVTRILVTHRQSTLEYVDKVYNLTTQGLEPVS
NT seq 2088 nt   +upstreamnt  +downstreamnt
atgtttgctcttttcccccaaaaaaaatgcccttttatcttccagtcggaaaatagtgag
tgcggtttagcttgcctcgccatgatctccagtttttatcaaagaaaaaccgatttaatg
accctcaggaaacaactgggttacagtgaatctgggatgtcggtacgcaccttgtgtgaa
tatgctgagcagataaacttagactctaggccgctacaggtcgatgttcacgagatagat
caacttcgcttaccctgcgtattacattgggacttgaatcattttgttgtgctcacacag
tgcagtaaaaaatctgtaacgattcacgatcctgctattggtaaagtgacctactcaatt
gaaaaatttaaacaacattataccggtattgcagtagaacttttcccagcgataaatttt
aaaaaagaaaaccgtgatacaggccttaaactaagccctttctggcaagcgagtgtaggc
ttaaaagcgggcctatttaaaatatttatcgcttcagtattgttacagctattttcactc
gcttctccttattatatgcaactcgtgattgatgacgtaatagtcaatcaagacagtgag
ctgctgacgttattgttcattgccttttctatgctggcactcgtctctcttgtaaccagt
attttacgagatttaattggtttacatatacagaaccatttaaatattcaatggagttca
gggttattttctcatttggttcgattacccattagttggtttgagaaacgtcatatcggc
gatattgttagccgctttggctcccaaggggaaattcagtcatttattacctctacgttt
gtcagtgttgtgcttgatggcttaatggtcacgacaaccttgataatgatgtacatctat
agtccaaaattgacaataatcgccattatagctgtgttaatttatgcatgtttgagatgg
atattctatcggccatttagaagaaatgctgaagaggtcataacagcctcagctaaggaa
gacagctttttcttagagggtatacgctcgattcaagctatacgtttacacggtcatgaa
gataagcgtaaaaacgaatggttatccctgcattctaacgtcgttaatttggggatcaaa
ggttcgctgtggtctttaggcttttcgtcagtgaatacgattgtgtttgcaattgaaaat
atgtgtgtaatttattttgcagcaaactttgtgatggagggtgttttttccatagggatg
atgatggcttttatgtcttataaagggcagttttcctcaagaattaatagccttatcgac
agttttgtttcgtttaaaatgctcgacattcacttatctaggctgtcagacattgcatta
gaaccccaagaggcccatcgtaagggcttgggattggcagaaaatatagtgggttgcatc
acacttgaaaacatcagctttagatatggactcaaatccaaaatcttgtttgataatgtt
aatctcacactcaaattcggcgataatattgcgataacaggggtttcaggcagtggtaaa
accaccttgctaaaaataatcttaggattactagagcctacctcaggaagaatacttttt
gatggggtagatatcaaaaaaattggcttagtgcagtacagaaaactgattggtagcgtt
atgcaaaatgattcgttgttatcgggcactttagccgacaatatttcgttttttgatgaa
gcctacaaccccttgaaaattgagcagtcatgtaaattagcgtcaatacatgatgatata
gaagccttacccatgggatatcaaacactcattggcgatatgggcgttcagttgtctggt
ggccaagtacaacgtgtattactggccagggccttataccttgaaccctgcgtactagta
ttggatgaagcaaccagtaatttagatatagacaatgaacagcgcattaattcaggtatt
agtagccttccagtgactaggatccttgtgactcatagacaatcaaccttggagtacgtg
gataaagtgtataacctaacgacccaagggcttgaacctgtttcataa

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