Shewanella denitrificans: Sden_0484
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Entry
Sden_0484 CDS
T00344
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn03420
Nucleotide excision repair
sdn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sden_0484
03430 Mismatch repair
Sden_0484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdn03400
]
Sden_0484
Enzymes [BR:
sdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sden_0484
DNA repair and recombination proteins [BR:
sdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sden_0484
MMR (mismatch excision repair)
Other MMR factors
Sden_0484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABE53776
UniProt:
Q12S00
LinkDB
All DBs
Position
complement(556553..558721)
Genome browser
AA seq
722 aa
AA seq
DB search
MDVSRLLDGLNDEQREAVGAPLSNMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVAGSNMGRMWIGTFHGLAHRLLRTHFQDANLPQSFQIIDSDDQL
RLLKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLNIYKVYQES
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQERFKHILVDEFQDTNAIQYAWIRVLAGNS
ANVMIVGDDDQSIYGWRGAQVENLHKFLQDFPGSSTIRLEQNYRSSANILNASNELIANN
PDRLGKKLWTEDKDGEPISIYCAFNEMDEARYIVSRIQDWQEKGGALTDCAILYRSNAQS
RVLEEAFLHKGMAYRIYGGLRFFERQEIKDAMGYMRLINNHNDDAAFERIVNTPTRGIGD
RTLDIMRTTARQHQLTLWQASLRLLEEKVLAGRAANAVRGFMDLIVDLKVDTEAMQLFTM
VDTVVNTSGLRSMYQAEKGEKAQSRIENLNELVTAARSFEMPEELEDMGELNAFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVEEGIFPSKMALDEGDRLDEERRLCY
VGMTRAMEKLTISYAESRRIYGREDYASPSRFIGEIPAKYVEEIRLRAKVTTPTMSSKIS
KPRATIAQDTGFKIGQTVKHFKFGQGDITSFEGMGDKARVQVNFTDVGSKWLLVTLAKLE
AC
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcaagattactagacggcttaaatgatgaacagcgtgaagccgtaggcgca
ccactatcgaacatgttagtgctcgctggcgcaggcagtggtaaaacccgtgtattaacc
catagaattgcttggttaatgcaggttgaacagcaaagcccctactccatcttagccgtg
accttcaccaataaagccgctgcagaaatgcgcgagcgcgttgaaaaagtggcaggctct
aacatgggccgcatgtggataggtaccttccatggcctagcccatcgtctactgcggacc
catttccaagatgctaacctgccccaaagctttcaaataatcgactctgacgatcagctt
cgcttacttaagcgcattttaaaaagcctaaacctcgacgaaaaacaatatccaccccgt
caagcccaaggctatatcaatggcaagaaagaccaaggactgcgccctaagcatatcgat
gctggcggtttccccattgaacaaaacctgctaaatatctataaagtttaccaagagtct
tgcgatcgcgcgggcttagtagactttgctgaaatcctcttgcgtgcccacgagctgtgg
ctcaataaaccccatttactggcgcactaccaagaacgcttcaaacacatcttagtggac
gagttccaagacactaacgccattcagtatgcgtggatccgtgtattggcaggtaacagt
gctaatgtgatgatagtgggtgatgacgatcagtccatctacggctggcgtggcgctcag
gttgaaaatctacacaagttcctacaagactttccaggttctagcaccatacgcttggaa
caaaattaccgttctagcgccaatattctgaatgcatccaacgaattaattgccaataac
ccagacaggttaggcaaaaagttgtggaccgaagataaagacggcgaacccatttccatt
tattgtgcctttaatgaaatggacgaggcccgttatatcgttagccgtatccaagactgg
caagaaaaaggcggcgccttaactgattgtgctattctctaccgttcaaatgcccaatct
cgggtattggaagaagctttcttacacaagggcatggcttaccgtatttatggtggtctg
cgcttcttcgaacgccaagaaatcaaagacgccatgggttacatgcgtcttatcaataat
cataatgatgatgcagcctttgagcgtatcgttaacacccccactcgcgggattggtgat
cgcaccttagatattatgcgcaccaccgccagacaacaccagctcaccctatggcaagcg
agtttacgtttgttggaagagaaagtcttagcgggtcgtgcggccaatgcggtgcgcggc
tttatggacttaatcgttgaccttaaagtcgacacagaagcaatgcagctgttcactatg
gtcgatactgtagtgaatacttctggccttagaagcatgtatcaagccgaaaaaggcgag
aaagcccaatctaggatcgagaacttaaacgaactcgtgacggcggcccgcagctttgaa
atgccagaagaacttgaagacatgggcgagctcaatgccttcttgtcccacgccgcgtta
gaagcgggtgaaggtcaagccgatgctttcactgatgcggtacagttgatgacactgcat
tctgccaagggactcgagtttcccatggtgtttatggctggcgtcgaagagggaatattc
cccagtaaaatggcgttggatgaaggcgatagactcgacgaagaacgtcgcctttgttat
gtgggcatgacccgcgccatggaaaaattgaccattagttacgccgaatcacgacgcatt
tatggtcgtgaagattacgcaagtccatcacgcttcattggcgaaattcccgctaaatat
gttgaagaaattcgccttcgggcaaaggtaacaaccccaaccatgagttctaaaattagc
aaaccaagagccaccatagcccaagacacaggctttaaaataggtcaaacggttaagcac
tttaaattcggccaaggcgatatcaccagctttgaaggcatgggggataaagctagggtt
caagtaaacttcaccgatgtaggcagtaaatggctgctggtcacacttgccaagcttgag
gcctgttaa
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