Shewanella denitrificans: Sden_0486
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Entry
Sden_0486 CDS
T00344
Name
(GenBank) Uncharacterised P-loop ATPase protein UPF0042
KO
K06958
RNase adapter protein RapZ
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdn03019
]
Sden_0486
Messenger RNA biogenesis [BR:
sdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sden_0486
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PapZ_C
RapZ-like_N
AAA_16
Integrase_1
DUF6489
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ABE53778
UniProt:
Q12RZ8
LinkDB
All DBs
Position
complement(559076..559930)
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AA seq
284 aa
AA seq
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MKLVIVSGRSGSGKSVALRVLEDLGYYCVDNLPLPLIGSLLAQLKSSNDLVAISVDVRNI
AEQGKVLEQQLALLPPETEISSFFLNSSDKVLLKRFSETRRLHPLSRSQMSLQEAIKLEG
RLLEPIAKMVDHHIDTSLLNVYELSDQVRQILLGSVDKELVINIESFGFKHGMPTEADFM
FDVRFLPNPHWETELRPLTGLDVPVQEFLARQPLVHKLIWQIENLFETWMPHLERNNRSY
LTIAIGCTGGQHRSVYIADQLAKRFANGKHVVNARHRELGDVKA
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttgtgatcgtatcggggcgttctggctcaggaaaatccgtcgcccttagggta
ttggaagacctaggttattactgcgtcgataacctaccactgcctttaattggtagcctg
ctggcacaactcaagagcagtaatgacttagtggccatcagtgtcgatgtgcgtaatatt
gccgagcagggcaaagtactcgagcagcaactggccctactgcctcctgaaacagaaatc
agcagtttcttcttaaattcaagtgacaaagtattacttaaacgcttcagcgaaacccgc
agactgcacccactatcgagaagccagatgtcgctgcaagaggcgattaaactcgagggc
cgcctacttgagcctatcgccaagatggtcgatcaccacatagacacctctttactcaat
gtgtatgaattaagcgatcaagtcaggcaaattttactgggcagcgtcgataaggaactg
gtgatcaacatagaatccttcggttttaaacatggcatgcccaccgaagccgatttcatg
ttcgatgtgcgtttcttgccaaatcctcattgggaaaccgagctgagaccactcacaggg
ctcgatgtccctgtgcaagagttcttagcgcgccagcccctagtgcataaattaatttgg
cagattgaaaacttattcgaaacctggatgccacaccttgagcgtaataaccgcagctat
ttaaccatagccataggctgtacgggtggccagcacagatctgtctacattgccgatcag
ctcgccaaacgctttgccaatggcaaacatgtggtcaacgcgcgtcatcgtgaattaggt
gacgtcaaagcctaa
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