Shewanella denitrificans: Sden_0744
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Entry
Sden_0744 CDS
T00344
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdn03009
]
Sden_0744
Enzymes [BR:
sdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sden_0744
Ribosome biogenesis [BR:
sdn03009
]
Prokaryotic type
rRNA helicases
Sden_0744
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
7TM_GPCR_Sra
CATSPERB_Ig-like
Utp25_C
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ABE54034
UniProt:
Q12R92
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Position
complement(864540..865775)
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AA seq
411 aa
AA seq
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MLFEDFHLDHSLLDSLKAMGHNTPTTIQQQTIPLAMEQEDILAKAPTGTGKTASFLLPAL
QHLIDFPRRFDGQARVLVLTPTRELASQIHRYACHLATDLGLDISIVTGGVPYGPQEEAL
AGNVDIMIATPGRLMEYLDKNKFDATEVEIMVIDEADRMLDMGFSSVVKTIAIEAQGCKQ
KMLFSATLEGGGVQRFARELLDDPVTVDVEAPRSEKAKIHQWIHLADDQTHKFALLCNLL
RQESVKRTIVFVKTREVVASLEGLLLKEGISCAFMRGDMEQKKRFQALGRFTKGEVDILL
ATDVAARGIDIDDITHVINYDMPRSADAYVHRIGRTGRAGAKGTAISLVEAHDMRIVSKI
ERYIEQPLKRRVIEELRPNNKEAKVPGKKKANAKDAKPSSKKYKKPKKKSS
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgctatttgaagatttccacctcgatcacagtctactcgactcactcaaggccatgggg
cataacaccccgaccactattcagcaacaaaccatacctttggccatggagcaggaggat
attcttgctaaagccccgactggaaccggaaaaactgccagctttctcttgcctgcgttg
caacaccttatcgatttcccgagacgtttcgacggccaagctagggtgttggtcctaact
cctacccgtgaattagccagtcaaattcatcgctacgcctgccatttggcaaccgatttg
ggcttagacatcagtattgtcacaggtggcgtcccttatggtcctcaggaagaagcctta
gcgggcaatgtcgatatcatgatcgccacacccggccgtttgatggaatacctggataag
aacaaatttgatgcgaccgaagtcgagatcatggtcatagatgaagccgatcgcatgtta
gacatgggtttctcctctgtggtgaaaaccatagctatcgaggctcaaggttgtaagcaa
aaaatgcttttctctgccactttagagggcggcggtgtacaacgtttcgcccgtgagtta
ttggacgatcctgtcactgtcgatgtggaagctcctcgcagcgaaaaagccaaaatccac
caatggatccacttggctgatgatcaaacccataagtttgctctgttatgcaacttatta
cgccaagaatcggttaagcgcaccatagtattcgtcaagactcgcgaagtggtggcaagc
cttgaagggctgctgcttaaagaaggtatttcttgtgcctttatgcgcggtgacatggaa
cagaaaaaacgcttccaagccttaggccgctttactaaaggcgaagtggatattttgctc
gccacagatgtagccgcccgtggcatagacattgacgatatcactcatgtgatcaactac
gacatgccccgctcagccgatgcttatgtgcatcgcataggccgtactggccgcgctggc
gccaaaggcaccgccatctcgttagttgaagctcatgatatgcgtatcgtcagcaagatt
gagcgttatattgaacagccgctaaagcgtcgcgtgatcgaagagctgcgtccgaacaat
aaagaagctaaagtacccggcaagaaaaaggccaatgcaaaagatgcaaaaccttcttcg
aagaaatataagaagccaaaaaagaaatcatcatag
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