Shewanella denitrificans: Sden_0749
Help
Entry
Sden_0749 CDS
T00344
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sdn
Shewanella denitrificans
Pathway
sdn03410
Base excision repair
sdn03430
Mismatch repair
sdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Sden_0749
03430 Mismatch repair
Sden_0749
03440 Homologous recombination
Sden_0749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdn03400
]
Sden_0749
DNA repair and recombination proteins [BR:
sdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Sden_0749
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Sden_0749
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sden_0749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ABE54039
UniProt:
Q12R87
LinkDB
All DBs
Position
870674..872398
Genome browser
AA seq
574 aa
AA seq
DB search
MSHSIVRRPMLDISHLPADMHPLLQQIFAKRGAAFDDCTLALNQLLHPKSMKGLAAAASI
VADAIMDNKSILIVGDFDADGATSTCVCMLALRMMGAKKVDYLIPNRFDYGYGLSPEIVA
LAYRKEAQLLITVDNGISSIEGVAAAKALGMQVVVTDHHLPGKTIPDADAIVNPNQAGCE
FSSKAIAGVGVAFYLMSALRQELRSRDWYQNQALPEPNLAELLDIVALGTVADVVAFDRN
NRIMVQAGLQRVRSGRCRVGITALLEVAKRTPERIVAADFGFAVGPRLNAAGRLDEMALG
VETLLCEDINLARRMAAQLDGLNTERRELEADMQQEALKTLASITLDETQLPWGIALFQA
DWHQGVIGILASRIKDRYHRPVIAFADAGDGSIKGSARSIKGLHMRDLLEQINTQHPGMI
LKFGGHAMAAGLTLAADHFDQFELAFDEAIRGLLTKEQLTGEVLSDGELAIEHMSLETAM
LLRNAGPWGQHFEEPVFDGVFTLVQQRLVGEKHLKMLLETQCASLMLDAIAFNVDLQAWP
DASVRHVRVAYKLDVNEFRGKQNLQLMIEHLEAV
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgtcccattctatagtccgtcgtccaatgcttgatataagccatcttcctgctgacatg
catccattgcttcagcaaatttttgctaaacgtggtgcggcctttgatgactgtacactg
gcattaaatcagcttttgcaccccaagagcatgaaaggattagccgcagcggcgagcata
gtggccgatgcaatcatggacaataagtcgattttaattgtcggtgactttgatgccgat
ggcgcgacgtcaacctgtgtgtgtatgttggcgctgcggatgatgggggctaaaaaagta
gattatttaatcccgaatcgattcgattacggttatgggttgagccctgaaattgtggct
ttggcttatcgtaaagaggcgcaattattgataaccgtcgataatggcatttcttccata
gagggggtcgccgccgctaaagccttaggcatgcaggtcgtggtcacagaccatcattta
ccgggcaaaactattcccgatgccgatgccatagtcaatcccaaccaagcgggctgtgaa
ttttccagtaaagccatcgctggggttggggtggcattctacttgatgtcggcgctgcgc
caagagttaaggtcaagggattggtaccagaatcaagcgctgcctgagccaaatttagcc
gagctattggacatcgtcgccttaggaaccgtggcggacgtggtggcttttgatagaaat
aatcgcatcatggtgcaggcaggactgcaaagagtcagaagcgggcgttgccgagtgggg
atcacagctttgcttgaagtggcaaaacgcacgcctgagcggatcgttgctgccgacttt
ggctttgccgttgggccaaggctcaatgccgctggccgtttagatgaaatggcattaggg
gtcgaaaccttattgtgtgaggatatcaacctagccagacgcatggcagcacagcttgat
gggttaaatacagagcgccgtgagcttgaagctgacatgcagcaagaagcccttaaaacc
ttagcctccatcaccctagatgaaactcaattgccttggggcatagcgctctttcaagcc
gattggcaccaaggggtgatagggattttagcgtcgcgaattaaagacagatatcacagg
cctgtgatcgcgtttgccgatgccggtgacgggagcattaaaggctcggctcgctccatt
aagggcttgcatatgcgtgacctattggagcaaataaacactcagcaccccggcatgatc
ttgaaatttggtggtcatgccatggcagcaggcttgacgttggcagcggatcattttgat
caatttgaactagccttcgatgaagccattagaggtttattgaccaaagaacaactcaca
ggtgaagtcttgtcagacggtgagcttgccatcgaacatatgtcccttgaaacggcgatg
ttattaagaaatgcaggcccctgggggcagcatttcgaagagccagtgtttgatggggtg
ttcaccttagtgcaacagagattagttggtgaaaaacaccttaaaatgctgctggaaact
cagtgtgccagcttaatgctcgatgctattgcctttaatgtcgatttgcaggcttggcca
gatgccagcgtgcgccacgtaagggtcgcttacaagttggatgttaacgaatttcgtggc
aagcaaaacctgcagttaatgatcgaacatttagaagccgtatag
DBGET
integrated database retrieval system
