Shewanella denitrificans: Sden_0886
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Entry
Sden_0886 CDS
T00344
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sdn
Shewanella denitrificans
Pathway
sdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sden_0886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdn03019
]
Sden_0886
Enzymes [BR:
sdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sden_0886
Messenger RNA biogenesis [BR:
sdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sden_0886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
P-loop_SecA
UTP25_NTPase-like
AAA_22
Helicase_RecD
Gag_p24
SecA_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABE54174
UniProt:
Q12QV2
LinkDB
All DBs
Position
complement(1010579..1011880)
Genome browser
AA seq
433 aa
AA seq
DB search
MKFESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPIL
QKMHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQAQK
LKQGADIIVATPGRLLEHIVACNLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKR
QNLLFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSELIG
TKNWQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVLVA
TEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADIE
KLIGQKIRRITVPGYEVSSRELLLKTIEKRRSFGKKQERNDNVGAQVVGEKNMQGRRVKV
GKPTSTVKYKKIK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaatcttttagcttcgccccagaaattttacgcgcgatcgctgagtgcggt
tatcagaatatgacgccagtgcagcaacaagctattccagctattcgccgcggtgaagac
gtattagccagcgcacaaaccggcacaggcaagacagccgcgttcgccctgcctattctg
caaaaaatgcatgaaagacctatgacggtgcagcattcaaatgcccgcgcgcttatttta
accccaactcgcgagctcgccgcccaagttgccgacaatatcagcgcctacagtaagcac
atgaacatcagcgtgctcaccatctacggcggcatgaaaatggccacccaagcgcaaaag
cttaagcaaggcgccgacatcatagtggcaaccccaggtcgtttactcgagcacatagtg
gcctgtaatttaagcctgtcaaatgtggaattcttagtattagacgaagccgaccgcatg
ctcgatatgggtttcagcacagatatccaaaaaattcttcaagccgtgaataagaaaaga
cagaatctgttattttcagccaccttctcaacggcggttaaaaagcttgccaatgacatg
ctggacaagccaaaaattatcagcgccgacaagcaaaacaccacggctgccaccgtaagc
caggtggtttaccccgttgagcagcgacgtaagcgcgaattattatcagaacttattggc
accaaaaattggcagcaggtactggtgtttaccgccacccgcgccgatgcagacaaatta
gtcacagagcttaacttagatggtattccgtcggccgtagtgcatggcgagaaagcccaa
ggcagccgtcgccgcgccctacgtgaatttattgaaggcaaggtacgggtcttagtggct
accgaagttgccgcccgtggtctagacattcaaggtttagaatacgtggtcaactatgac
ttgcccttccttgctgaagattacgtgcaccgtattggccgtaccggccgtgcgggtaag
acaggggttgccatttcattcgttagccgcgaagaagagcgcactcttgctgacatcgaa
aagcttatcggccagaaaattcgccgcattaccgtgccaggttatgaagtcagcagccgc
gagctactgcttaaaaccatagagaagcgtcgcagctttggtaagaagcaggagcgtaac
gataacgtcggcgctcaggttgtgggtgagaaaaacatgcaaggtcgccgcgtcaaagta
ggcaaacctaccagcacagtaaaatacaagaagattaagtaa
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