Shewanella denitrificans: Sden_1006
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Entry
Sden_1006 CDS
T00344
Name
(GenBank) NusA antitermination factor
KO
K02600
transcription termination/antitermination protein NusA
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdn03021
]
Sden_1006
03009 Ribosome biogenesis [BR:
sdn03009
]
Sden_1006
Transcription machinery [BR:
sdn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
Sden_1006
Ribosome biogenesis [BR:
sdn03009
]
Prokaryotic type
rRNA transcription factors
Sden_1006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NusA_N
KH_5
HHH_5
S1
KH_NusA_C
Glyoxalase_4
KH_KhpA-B
DUF2187
Motif
Other DBs
NCBI-ProteinID:
ABE54294
UniProt:
Q12QI2
LinkDB
All DBs
Position
1145078..1146577
Genome browser
AA seq
499 aa
AA seq
DB search
MNKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGHYDTFR
RWMVVDDQGEALENPYSEITLEAARYEEPGIEPGQYIEDQIDSVVFDRITTQTAKQVIVQ
KVREAERAQVVEQFIEKEGEIVTGIVKKSSRENVVVDLGNNADGVLFKEDLISRESFRPG
DRVRALLYSVRPEARGAQLFLTRSKPEMLIELFRVEVPEIYDEMIEIMGAARDPGARAKI
AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDENPAQYVINAMAPADVASI
IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVI
DLFVSALEVDTDFATVLAEEGFTSLEEIAYVPEAELLAIDGFDSDIVETLRERAKAAIST
RALATEEALDGAEPSEDLLALEGLERHLAYVLASKGVVTLEDLAEQGIDDLIEIEELTEA
KAGELIMAARNICWFGEEA
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagaaatcctgctagtcgcagaggcagtttctaatgaaaaagccgtaccccgc
gaaaaaatatttgaagcgctagaaattgcactagctacagcaaccaagaaaaagtacgaa
ggtgacatcgaggttcgtgttgctatcgatcgtaaaacgggtcactacgacactttccgt
cgttggatggtggttgacgatcaaggtgaagcattagaaaatccgtacagtgaaatcacc
ttagaagcggcccgttacgaagagccaggcatagagcctggtcaatacatagaagaccaa
attgattctgtggtttttgaccgtattacgacccaaaccgcgaagcaagtcatagtacaa
aaagtacgtgaagcagagcgcgcccaagttgtagaacagttcatcgaaaaagaaggtgag
attgttactggtattgttaagaaaagcagccgtgaaaacgtggttgtcgacttaggtaac
aatgctgacggcgtgctgttcaaagaagatttgatcagccgtgagtctttccgtccaggt
gaccgcgttcgcgcattactttactcagtccgtcctgaagcacgcggcgcgcagttattt
ttaactcgctctaagcctgaaatgctgatcgaactgttccgtgttgaagtgcctgaaata
tacgacgagatgatcgaaatcatgggcgcagctcgtgatcctggtgctcgcgctaagata
gccgttaagtctaacgatagacgtatcgaccctatcggtgcttgtgtgggcatgcgcggc
gcacgtgttcaagccgtttctaacgagcttggcggtgagcgtgttgatatcgtgttgtgg
gatgagaatccagcgcaatatgtgatcaatgccatggcaccagccgatgtggcttctatc
atagtcgacgaagataaccattctatggatatcgccgttgaagccgatagtttggcacaa
gccattggtcgaaatggacaaaacgtacgtttagcgactcagcttaccggctgggaactg
aacgtaatgacagtggaagacatgaataagaagcaccaggcagaaagtgccaaggtgatc
gacttattcgtgagcgccctggaagtggatactgactttgcaactgtgcttgcagaagaa
ggcttcacttcattagaagaaatcgcttacgtaccagaagcggaattactagctatcgat
ggttttgatagtgacatagtagaaacattacgtgaacgtgcaaaagcggctatttctacc
cgtgcattagccacggaagaagcattagatggcgctgagccaagtgaagatttattagca
ttggaagggttggaaaggcatttagcttatgttctagcgagcaaaggcgttgtgacttta
gaagacctagccgaacaaggcatagacgatttgatcgaaattgaagaattaacagaagca
aaagcaggtgagctcatcatggcggcccgcaatatctgttggtttggcgaagaagcataa
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