Shewanella denitrificans: Sden_1009
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Entry
Sden_1009 CDS
T00344
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sdn
Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:
sdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdn03016
]
Sden_1009
Enzymes [BR:
sdn01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Sden_1009
Transfer RNA biogenesis [BR:
sdn03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Sden_1009
Prokaryotic type
Sden_1009
BRITE hierarchy
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GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Nrd1-Seb1_dom2
Motif
Other DBs
NCBI-ProteinID:
ABE54297
UniProt:
Q12QH9
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All DBs
Position
1149757..1150710
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AA seq
317 aa
AA seq
DB search
MARRSKGRQIDGIVLLDKDTGMSSNYALQRVKRFFNANKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDADKRYLVTAKLGVRTDTSDSDGEVVQTRDINFTQAQLETALEHFRGDTMQ
VPSMFSALKHQGQPLYKYAREGIEVPREARPITVFELNFIKLEGDELTLDIHCSKGTYIR
TITDDLGEMLGCGAHVIMLRRTQVADYPYDKMVSLADLEALVTQAQQQELAVGELLDPLL
LPMDTAVANFPEINLPESMLYYVMQGQAVQASGLKIDVLVRITIGEQRKFVGIGIMNDDG
LLAPKRLIVIPAEESPE
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtcgctccaaaggtcgccaaatcgacggtatagtcttactcgataaagacacg
ggcatgagttcaaactatgcactgcaacgagtaaaacgtttttttaacgccaataaagcc
ggccatacaggggcgctcgatccattagcgacaggtatgctgcctatctgtttaggcgaa
gccaccaagttctctcagcatcttttagatgccgacaagcgttacctagtgacggcgaaa
cttggggtgcgtactgacaccagcgattccgacggtgaagtggtgcaaacccgggacatt
aattttactcaggcacagcttgaaacggcgcttgagcatttccgtggtgataccatgcaa
gtgccttcgatgttctcagcccttaaacatcagggtcagcctttgtacaagtatgcccgt
gaaggcatagaagtcccaagggaagcgcgtcccattactgtatttgagcttaattttatt
aagcttgaaggggatgagttaaccttagatattcattgctctaagggcacttatattcgc
accatcaccgatgatttaggtgagatgctaggttgtggtgctcacgttatcatgctgcgt
cgcacccaagtggctgactatccttatgataaaatggtgagccttgcagatcttgaagcc
ttggtaactcaagcgcagcagcaggaattggccgtaggcgagttactcgaccccttgcta
ttgcctatggataccgcggtggctaatttccctgagattaacctgccagaatccatgctt
tattacgtgatgcaaggtcaagctgtgcaggcgtctggccttaaaattgacgtattagtg
cgtatcactattggtgaacagcgtaagtttgtgggcattgggataatgaatgacgatggt
ttgcttgcgcctaagcgcttgattgttattccagcggaagaatcaccagagtaa
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